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MorphoTools2
View on CRAN: Click
here
Download and install MorphoTools2 package within the R console
Install from CRAN:
install.packages("MorphoTools2")
Install from Github:
library("remotes")
install_github("cran/MorphoTools2")
Install by package version:
library("remotes")
install_version("MorphoTools2", "1.0.2.1")
Attach the package and use:
library("MorphoTools2")
Maintained by
Marek Šlenker
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-11-22
Latest Update: 2023-02-19
Description:
Tools for multivariate analyses of morphological data, wrapped in one package, to make the workflow convenient and fast. Statistical and graphical tools provide a comprehensive framework for checking and manipulating input data, statistical analyses, and visualization of results. Several methods are provided for the analysis of raw data, to make the dataset ready for downstream analyses. Integrated statistical methods include hierarchical classification, principal component analysis, principal coordinates analysis, non-metric multidimensional scaling, and multiple discriminant analyses: canonical, stepwise, and classificatory (linear, quadratic, and the non-parametric k nearest neighbours). The philosophy of the package is described in
How to cite:
Marek Šlenker (2021). MorphoTools2: Multivariate Morphometric Analysis. R package version 1.0.2.1, https://cran.r-project.org/web/packages/MorphoTools2. Accessed 18 Feb. 2025.
Previous versions and publish date:
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Other R packages that MorphoTools2 depends,
imports, suggests or enhances
Complete documentation for MorphoTools2
Functions, R codes and Examples using
the MorphoTools2 R package
Some associated functions: boxMTest . boxplotCharacter . cda.calc . cdadata . centaurea . characters . classif.lda . classif.matrix . classifSample.lda . classifdata . clust . cormat . descrTaxon . exportRes . head.morphodata . histCharacter . keepTaxon . knn.select . missingCharactersTable . missingSamplesTable . morphodata . naMeanSubst . nmds.calc . nmdsdata . pca.calc . pcadata . pcoa.calc . pcoadata . plot3Dpoints . plotAddEllipses . plotAddLabels.characters . plotAddLabels.points . plotAddLegend . plotAddSpiders . plotCharacters . plotPoints . populOTU . qqnormCharacter . read.morphodata . removeTaxon . shapiroWilkTest . stepdisc.calc . summary . transformCharacter . viewMorphodata .
Some associated R codes: BoxMTest.R . SampsPopsTax.R . boxplots.R . calcDistance.R . cda.calc.R . centaurea.R . classif.knn.R . classif.lda.R . classif.qda.R . classifMatrix.R . classifSample.knn.R . classifSample.lda.R . classifSample.qda.R . clust.R . correlations.R . descrStatistics.R . export.res.R . helperMethods.R . histCharacter.R . keep.itemInMorphodataObject.R . knn.select.R . missingDataTable.R . na.meanSubst.R . newObject.R . nmds.calc.R . pca.calc.R . pcoa.calc.R . plot.3Dpoints.R . plot.R . plot.addEllipses.R . plot.addLabels.characters.R . plot.addLabels.points.R . plot.addLegend.R . plot.addSpiders.R . plot.characters.R . plot.points.R . popul.otu.R . print.R . qq.R . read.morphodata.R . remove.itemFromMorphodataObject.R . shapirowilk.R . stepdisc.calc.R . summary.R . transformCharacter.R . viewMorphodata.R . zzz.R . Full MorphoTools2 package functions and examples
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