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Momocs  

Morphometrics using R
View on CRAN: Click here


Download and install Momocs package within the R console
Install from CRAN:
install.packages("Momocs")

Install from Github:
library("remotes")
install_github("cran/Momocs")

Install by package version:
library("remotes")
install_version("Momocs", "1.4.1")



Attach the package and use:
library("Momocs")
Maintained by
Vincent Bonhomme
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-05-01
Latest Update: 2022-04-04
Description:
The goal of 'Momocs' is to provide a complete, convenient, reproducible and open-source toolkit for 2D morphometrics. It includes most common 2D morphometrics approaches on outlines, open outlines, configurations of landmarks, traditional morphometrics, and facilities for data preparation, manipulation and visualization with a consistent grammar throughout. It allows reproducible, complex morphometrics analyses and other morphometrics approaches should be easy to plug in, or develop from, on top of this canvas.
How to cite:
Vincent Bonhomme (2012). Momocs: Morphometrics using R. R package version 1.4.1, https://cran.r-project.org/web/packages/Momocs. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.1-01 (2012-05-02 09:45), 0.1-02 (2012-08-21 07:03), 0.1-03 (2012-09-04 12:38), 0.1 (2012-05-01 10:05), 0.2-01 (2012-10-18 15:22), 0.2-02 (2012-11-12 07:38), 0.2-03 (2013-02-26 16:19), 0.2-04 (2013-05-08 15:47), 0.2-5 (2014-02-17 16:53), 0.2-6 (2014-03-07 11:58), 1.0.0 (2016-03-18 18:34), 1.1.0 (2016-10-25 23:37), 1.1.6 (2017-04-17 16:48), 1.2.2 (2017-09-28 10:03), 1.2.9 (2018-03-22 23:26), 1.3.0 (2020-04-15 16:00), 1.3.2 (2020-10-06 17:20), 1.4.0 (2022-04-04 18:50)
Other packages that cited Momocs R package
View Momocs citation profile
Other R packages that Momocs depends, imports, suggests or enhances
Complete documentation for Momocs
Functions, R codes and Examples using the Momocs R package
Some associated functions: CLUST . Coe . Coo . KMEANS . KMEDOIDS . LDA . Ldk . MANOVA . MANOVA_PW . MDS . MSHAPES . Momocs . NMDS . Opn . OpnCoe . Out . OutCoe . PCA . PCcontrib . Ptolemy . TraCoe . add_ldk . arrange . as_df . at_least . babel . bezier . bezier_i . boxplot.OutCoe . boxplot.PCA . breed . bridges . calibrate_deviations . calibrate_harmonicpower . calibrate_r2 . calibrate_reconstructions . chop . classification_metrics . coeff_rearrange . coeff_sel . coeff_split . color_palettes . color_transparency . combine . complex . coo_align . coo_aligncalliper . coo_alignminradius . coo_alignxax . coo_angle_edges . coo_angle_tangent . coo_area . coo_arrows . coo_baseline . coo_bookstein . coo_boundingbox . coo_calliper . coo_centdist . coo_center . coo_centpos . coo_centsize . coo_check . coo_chull . coo_circularity . coo_close . coo_convexity . coo_down . coo_draw . coo_draw_rads . coo_dxy . coo_eccentricity . coo_elongation . coo_extract . coo_flip . coo_force2close . coo_interpolate . coo_intersect_angle . coo_intersect_segment . coo_is_closed . coo_jitter . coo_ldk . coo_left . coo_length . coo_likely_clockwise . coo_listpanel . coo_lolli . coo_lw . coo_nb . coo_oscillo . coo_perim . coo_plot . coo_range . coo_rectangularity . coo_rectilinearity . coo_rev . coo_right . coo_rotate . coo_rotatecenter . coo_ruban . coo_sample . coo_sample_prop . coo_samplerr . coo_scalars . coo_scale . coo_shear . coo_slice . coo_slide . coo_slidedirection . coo_slidegap . coo_smooth . coo_smoothcurve . coo_solidity . coo_tac . coo_template . coo_trans . coo_trim . coo_trimbottom . coo_trimtop . coo_truss . coo_untiltx . coo_up . coo_width . d . data_apodemus . data_bot . data_chaff . data_charring . data_flower . data_hearts . data_molars . data_mosquito . data_mouse . data_nsfishes . data_oak . data_olea . data_shapes . data_trilo . data_wings . def_ldk . def_ldk_angle . def_ldk_tips . def_links . def_slidings . dfourier . dfourier_i . dfourier_shape . dissolve . drawers . ed . edi . edm . edm_nearest . efourier . efourier_i . efourier_shape . export . fProcrustes . fac_dispatcher . fgProcrustes . fgsProcrustes . filter . flip_PCaxes . get_chull_area . get_ldk . get_pairs . get_slidings . harm.contrib . harm_pow . img_plot . import_Conte . import_StereoMorph . import_jpg . import_jpg1 . import_tps . import_txt . inspect . is . is_equallyspacedradii . layers . layers_morphospace . ldk_check . ldk_chull . ldk_confell . ldk_contour . ldk_labels . ldk_links . lf_structure . links_all . links_delaunay . measure . morphospace_positions . mosaic . mutate . npoly . opoly . pProcrustes . palettes . panel.Coo . papers . perm . pile . plot.LDA . plot.PCA . plot_CV . plot_CV2 . plot_LDA . plot_MSHAPES . plot_NMDS . plot_PCA . plot_devsegments . plot_silhouette . plot_table . poly_i . reLDA . rePCA . rearrange_ldk . reexports . rename . rescale . rfourier . rfourier_i . rfourier_shape . rm_asym . rm_harm . rm_missing . rm_uncomplete . rw_fac . sample_frac . sample_n . scree . select . sfourier . sfourier_i . sfourier_shape . slice . slidings_scheme . stack.Coo . subset . symmetry . tfourier . tfourier_i . tfourier_shape . tie_jpg_txt . tps2d . tps_arr . tps_grid . tps_iso . tps_raw . verify . which_out . 
Some associated R codes: Momocs-package.R . babel-bridges.R . babel-export.R . babel-import.R . cl-def-CooCoe.R . cl-def-Ldk.R . cl-def-Opn.R . cl-def-Out.R . cl-def-TraCoe.R . cl-farming.R . cl-handling.R . cl-helpers.R . cl-validate.R . coo-ldk-utilities.R . coo-shapedescriptors.R . coo-utilities.R . core-calibrate.R . core-ldk-procrustes.R . core-opn-bezier.R . core-opn-dct.R . core-opn-polynomials.R . core-out-efourier.R . core-out-rfourier.R . core-out-sfourier.R . core-out-tfourier.R . core-premodern.R . core-utils.R . gr-Coe.R . gr-Coo.R . gr-LDA.R . gr-MSHAPES.R . gr-NMDS.R . gr-PCA.R . gr-TPS.R . gr-domesticplotters.R . gr-layers.R . gr-misc.R . gr-morphospaces.R . gr-morphospaces2.R . gr-palettes.R . gr-themes.R . grindr-drawers.R . grindr-layers-morphospace.R . grindr-layers.R . grindr-mosaic.R . grindr-papers.R . grindr-pile.R . grindr-utils.R . mult-KMEANS.R . mult-KMEDOIDS.R . mult-LDA.R . mult-MSHAPESs.R . mult-Manova.R . mult-NMDS.R . mult-PCA.R . mult-clust.R . pkg-datasets.R . pkg-internals.R . pkg-misc.R .  Full Momocs package functions and examples
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