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Map2NCBI
View on CRAN: Click
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Download and install Map2NCBI package within the R console
Install from CRAN:
install.packages("Map2NCBI")
Install from Github:
library("remotes")
install_github("cran/Map2NCBI")
Install by package version:
library("remotes")
install_version("Map2NCBI", "1.4")
Attach the package and use:
library("Map2NCBI")
Maintained by
Lauren Hanna
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-09-24
Latest Update: 2020-01-24
Description:
Allows the user to generate a list of features (gene, pseudo, RNA,
CDS, and/or UTR) directly from NCBI database for any species with a current
build available. Option to save downloaded and formatted files is available,
and the user can prioritize the feature list based on type and assembly builds
present in the current build used. The user can then use the list of features
generated or provide a list to map a set of markers (designed for SNP markers
with a single base pair position available) to the closest feature based on
the map build. This function does require map positions of the markers to be
provided and the positions should be based on the build being queried through
NCBI.
How to cite:
Lauren Hanna (2013). Map2NCBI: Mapping Markers to the Nearest Genomic Feature. R package version 1.4, https://cran.r-project.org/web/packages/Map2NCBI. Accessed 22 Dec. 2024.
Previous versions and publish date:
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Other R packages that Map2NCBI depends,
imports, suggests or enhances
Complete documentation for Map2NCBI
Functions, R codes and Examples using
the Map2NCBI R package
Some associated functions: Example10MarkerFile . GeneList_BTA1 . GetGeneList . Map2NCBI-package . MapMarkers .
Some associated R codes: GetGeneList.R . MapMarkers.R . Full Map2NCBI package functions and examples
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