Other packages > Find by keyword >

Map2NCBI  

Mapping Markers to the Nearest Genomic Feature
View on CRAN: Click here


Download and install Map2NCBI package within the R console
Install from CRAN:
install.packages("Map2NCBI")

Install from Github:
library("remotes")
install_github("cran/Map2NCBI")

Install by package version:
library("remotes")
install_version("Map2NCBI", "1.5")



Attach the package and use:
library("Map2NCBI")
Maintained by
Lauren Hanna
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-09-24
Latest Update: 2025-04-18
Description:
Allows the user to generate a list of features (gene, pseudo, RNA, CDS, and/or UTR) directly from NCBI database for any species with a current build available. Option to save downloaded and formatted files is available, and the user can prioritize the feature list based on type and assembly builds present in the current build used. The user can then use the list of features generated or provide a list to map a set of markers (designed for SNP markers with a single base pair position available) to the closest feature based on the map build. This function does require map positions of the markers to be provided and the positions should be based on the build being queried through NCBI.
How to cite:
Lauren Hanna (2013). Map2NCBI: Mapping Markers to the Nearest Genomic Feature. R package version 1.5, https://cran.r-project.org/web/packages/Map2NCBI. Accessed 26 Aug. 2026.
Previous versions and publish date:
1.0 (2013-09-24 23:08), 1.1 (2015-11-13 08:55), 1.2 (2019-04-17 15:30), 1.3 (2019-05-15 21:30), 1.4 (2020-01-24 20:10), (2026-07-09 08:10)
Other packages that cited Map2NCBI R package
View Map2NCBI citation profile
Other R packages that Map2NCBI depends, imports, suggests or enhances
Complete documentation for Map2NCBI
Functions, R codes and Examples using the Map2NCBI R package
Some associated functions: Example10MarkerFile . GeneList_BTA1 . GetGeneList . Map2NCBI-package . MapMarkers . 
Some associated R codes: GetGeneList.R . MapMarkers.R .  Full Map2NCBI package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

clinUtils  
General Utility Functions for Analysis of Clinical Data
Utility functions to facilitate the import, the reporting and analysis of clinical data. Example ...
Download / Learn more Package Citations See dependency  
leafgl  
High-Performance 'WebGl' Rendering for Package 'leaflet'
Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript l ...
Download / Learn more Package Citations See dependency  
ncodeR  
Techniques for Automated Classifiers
A set of techniques that can be used to develop, validate, and implement automated classifiers. A po ...
Download / Learn more Package Citations See dependency  
PCADSC  
Tools for Principal Component Analysis-Based Data Structure Comparisons
A suite of non-parametric, visual tools for assessing differences in data structures for two datase ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
SelvarMix  
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
Performs a regularization approach to variable selection in themodel-based clustering and classifica ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA