Other packages > Find by keyword >

MADPop  

MHC Allele-Based Differencing Between Populations
View on CRAN: Click here


Download and install MADPop package within the R console
Install from CRAN:
install.packages("MADPop")

Install from Github:
library("remotes")
install_github("cran/MADPop")

Install by package version:
library("remotes")
install_version("MADPop", "1.1.7")



Attach the package and use:
library("MADPop")
Maintained by
Martin Lysy
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-01-18
Latest Update: 2024-02-27
Description:
Tools for the analysis of population differences using the Major Histocompatibility Complex (MHC) genotypes of samples having a variable number of alleles (1-4) recorded for each individual. A hierarchical Dirichlet-Multinomial model on the genotype counts is used to pool small samples from multiple populations for pairwise tests of equality. Bayesian inference is implemented via the 'rstan' package. Bootstrapped and posterior p-values are provided for chi-squared and likelihood ratio tests of equal genotype probabilities.
How to cite:
Martin Lysy (2017). MADPop: MHC Allele-Based Differencing Between Populations. R package version 1.1.7, https://cran.r-project.org/web/packages/MADPop. Accessed 05 Aug. 2026.
Previous versions and publish date:
1.1.1 (2018-10-27 17:20), 1.1.2 (2018-11-08 17:00), 1.1.4 (2022-08-22 11:20), 1.1.5 (2023-04-04 17:00), 1.1.6 (2023-10-13 18:30), 1.1 (2017-01-18 08:37), (2026-07-09 08:08)
Other packages that cited MADPop R package
View MADPop citation profile
Other R packages that MADPop depends, imports, suggests or enhances
Complete documentation for MADPop
Functions, R codes and Examples using the MADPop R package
Some associated functions: LRT.stat . MADPop . UM.eqtest . UM.suff . chi2.stat . colSort . fish215 . geno.format . hUM.post . 
Some associated R codes: LRT.stat.R . MADPop-package.R . UM.eqtest.R . UM.suff.R . chi2.stat.R . colSort.R . fish215.R . geno.format.R . hUM.post.R . stanmodels.R .  Full MADPop package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

dhReg  
Dynamic Harmonic Regression
Building and forecasting time series data with multiple seasonality using Dynamic Harmonic Regressio ...
Download / Learn more Package Citations See dependency  
noisyr  
Noise Quantification in High Throughput Sequencing Output
Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are use ...
Download / Learn more Package Citations See dependency  
kernelPSI  
Post-Selection Inference for Nonlinear Variable Selection
Different post-selection inference strategies for kernelselection as described in kernelPSI a Post-S ...
Download / Learn more Package Citations See dependency  
dcov  
A Fast Implementation of Distance Covariance
Efficient methods for computing distance covariance and relevant statistics. See Sz ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA