Other packages > Find by keyword >

MADPop  

MHC Allele-Based Differencing Between Populations
View on CRAN: Click here


Download and install MADPop package within the R console
Install from CRAN:
install.packages("MADPop")

Install from Github:
library("remotes")
install_github("cran/MADPop")

Install by package version:
library("remotes")
install_version("MADPop", "1.1.7")



Attach the package and use:
library("MADPop")
Maintained by
Martin Lysy
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-01-18
Latest Update: 2024-02-27
Description:
Tools for the analysis of population differences using the Major Histocompatibility Complex (MHC) genotypes of samples having a variable number of alleles (1-4) recorded for each individual. A hierarchical Dirichlet-Multinomial model on the genotype counts is used to pool small samples from multiple populations for pairwise tests of equality. Bayesian inference is implemented via the 'rstan' package. Bootstrapped and posterior p-values are provided for chi-squared and likelihood ratio tests of equal genotype probabilities.
How to cite:
Martin Lysy (2017). MADPop: MHC Allele-Based Differencing Between Populations. R package version 1.1.7, https://cran.r-project.org/web/packages/MADPop. Accessed 25 Jun. 2026.
Previous versions and publish date:
1.1.1 (2018-10-27 17:20), 1.1.2 (2018-11-08 17:00), 1.1.4 (2022-08-22 11:20), 1.1.5 (2023-04-04 17:00), 1.1.6 (2023-10-13 18:30), 1.1 (2017-01-18 08:37)
Other packages that cited MADPop R package
View MADPop citation profile
Other R packages that MADPop depends, imports, suggests or enhances
Complete documentation for MADPop
Functions, R codes and Examples using the MADPop R package
Some associated functions: LRT.stat . MADPop . UM.eqtest . UM.suff . chi2.stat . colSort . fish215 . geno.format . hUM.post . 
Some associated R codes: LRT.stat.R . MADPop-package.R . UM.eqtest.R . UM.suff.R . chi2.stat.R . colSort.R . fish215.R . geno.format.R . hUM.post.R . stanmodels.R .  Full MADPop package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA