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LPmerge  

Merging Linkage Maps by Linear Programming
View on CRAN: Click here


Download and install LPmerge package within the R console
Install from CRAN:
install.packages("LPmerge")

Install from Github:
library("remotes")
install_github("cran/LPmerge")

Install by package version:
library("remotes")
install_version("LPmerge", "1.7")



Attach the package and use:
library("LPmerge")
Maintained by
Jeffrey Endelman
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-08-04
Latest Update: 2018-06-07
Description:
Creates a consensus genetic map by merging linkage maps from different populations. The software uses linear programming (LP) to efficiently minimize the mean absolute error between the consensus map and the linkage maps. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.
How to cite:
Jeffrey Endelman (2013). LPmerge: Merging Linkage Maps by Linear Programming. R package version 1.7, https://cran.r-project.org/web/packages/LPmerge
Previous versions and publish date:
1.4 (2013-08-04 17:19), 1.5 (2014-01-06 07:12), 1.6 (2014-08-17 01:14)
Other packages that cited LPmerge R package
View LPmerge citation profile
Other R packages that LPmerge depends, imports, suggests or enhances
Functions, R codes and Examples using the LPmerge R package
Some associated functions: LPmerge . 
Some associated R codes: LPmerge.R .  Full LPmerge package functions and examples
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