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LPmerge
View on CRAN: Click
here
Download and install LPmerge package within the R console
Install from CRAN:
install.packages("LPmerge")
Install from Github:
library("remotes")
install_github("cran/LPmerge")
Install by package version:
library("remotes")
install_version("LPmerge", "1.7")
Attach the package and use:
library("LPmerge")
Maintained by
Jeffrey Endelman
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-08-04
Latest Update: 2018-06-07
Description:
Creates a consensus genetic map by merging linkage maps from different populations. The software uses linear programming (LP) to efficiently minimize the mean absolute error between the consensus map and the linkage maps. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.
How to cite:
Jeffrey Endelman (2013). LPmerge: Merging Linkage Maps by Linear Programming. R package version 1.7, https://cran.r-project.org/web/packages/LPmerge. Accessed 01 Feb. 2025.
Previous versions and publish date:
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Complete documentation for LPmerge
Functions, R codes and Examples using
the LPmerge R package
Some associated functions: LPmerge .
Some associated R codes: LPmerge.R . Full LPmerge package functions and examples
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