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LDlinkR  

Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest
View on CRAN: Click here


Download and install LDlinkR package within the R console
Install from CRAN:
install.packages("LDlinkR")

Install from Github:
library("remotes")
install_github("cran/LDlinkR")

Install by package version:
library("remotes")
install_version("LDlinkR", "1.4.0")



Attach the package and use:
library("LDlinkR")
Maintained by
Timothy A. Myers
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-08-01
Latest Update: 2024-04-10
Description:
Provides access to the 'LDlink' API () using the R console. This programmatic access facilitates researchers who are interested in performing batch queries in 1000 Genomes Project (2015) data using 'LDlink'. 'LDlink' is an interactive and powerful suite of web-based tools for querying germline variants in human population groups of interest. For more details, please see Machiela et al. (2015) .
How to cite:
Timothy A. Myers (2019). LDlinkR: Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest. R package version 1.4.0, https://cran.r-project.org/web/packages/LDlinkR. Accessed 06 Mar. 2026.
Previous versions and publish date:
1.0.0 (2019-08-01 14:50), 1.0.1 (2019-10-17 22:50), 1.0.2 (2020-03-02 22:10), 1.1.1 (2021-02-02 02:10), 1.1.2 (2021-02-19 20:50), 1.2.0 (2022-05-11 20:10), 1.2.1 (2022-06-07 06:20), 1.2.2 (2022-08-08 18:10), 1.2.3 (2022-12-15 17:00), 1.3.0 (2023-05-31 20:10)
Other packages that cited LDlinkR R package
View LDlinkR citation profile
Other R packages that LDlinkR depends, imports, suggests or enhances
Complete documentation for LDlinkR
Functions, R codes and Examples using the LDlinkR R package
Some associated functions: LDexpress . LDhap . LDlinkR-package . LDmatrix . LDpair . LDpop . LDproxy . LDproxy_batch . LDtrait . SNPchip . SNPclip . list_chips . list_gtex_tissues . list_pop . 
Some associated R codes: LDexpress.R . LDhap.R . LDlinkR-package.R . LDmatrix.R . LDpair.R . LDpop.R . LDproxy.R . LDproxy_batch.R . LDtrait.R . SNPchip.R . SNPclip.R . list_chips.R . list_gtex_tissues.R . list_pop.R .  Full LDlinkR package functions and examples
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