Other packages > Find by keyword >

ICDS  

Identification of Cancer Dysfunctional Subpathway with Omics Data
View on CRAN: Click here


Download and install ICDS package within the R console
Install from CRAN:
install.packages("ICDS")

Install from Github:
library("remotes")
install_github("cran/ICDS")

Install by package version:
library("remotes")
install_version("ICDS", "0.1.3")



Attach the package and use:
library("ICDS")
Maintained by
Junwei Han
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-01-25
Latest Update: 2024-08-01
Description:
Identify Cancer Dysfunctional Sub-pathway by integrating gene expression, DNA methylation and copy number variation, and pathway topological information. 1)We firstly calculate the gene risk scores by integrating three kinds of data: DNA methylation, copy number variation, and gene expression. 2)Secondly, we perform a greedy search algorithm to identify the key dysfunctional sub-pathways within the pathways for which the discriminative scores were locally maximal. 3)Finally, the permutation test was used to calculate statistical significance level for these key dysfunctional sub-pathways.
How to cite:
Junwei Han (2019). ICDS: Identification of Cancer Dysfunctional Subpathway with Omics Data. R package version 0.1.3, https://cran.r-project.org/web/packages/ICDS. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.1.1 (2019-01-25 18:00), 0.1.2 (2021-07-15 13:30), 0.1.3 (2024-08-01 11:40)
Other packages that cited ICDS R package
View ICDS citation profile
Other R packages that ICDS depends, imports, suggests or enhances
Complete documentation for ICDS
Functions, R codes and Examples using the ICDS R package
Some associated functions: FindSubPath . GetExampleData . ICDS-package . Permutation . PlotSubpathway . combinep_three . combinep_two . coverp2zscore . envData . getCnvp . getExpp . getMethp . opt_subpath . 
Some associated R codes: GetExampleData.R . ICDS-package.R . OptimalSubpath.R . getEnvironmentData.R . getp.R .  Full ICDS package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA