Other packages > Find by keyword >

FamEvent  

Family Age-at-Onset Data Simulation and Penetrance Estimation
View on CRAN: Click here


Download and install FamEvent package within the R console
Install from CRAN:
install.packages("FamEvent")

Install from Github:
library("remotes")
install_github("cran/FamEvent")

Install by package version:
library("remotes")
install_version("FamEvent", "3.3")



Attach the package and use:
library("FamEvent")
Maintained by
Yun-Hee Choi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-02-09
Latest Update: 2024-07-02
Description:
Simulates age-at-onset traits associated with a segregating major gene in family data obtained from population-based, clinic-based, or multi-stage designs. Appropriate ascertainment correction is utilized to estimate age-dependent penetrance functions either parametrically from the fitted model or nonparametrically from the data. The Expectation and Maximization algorithm can infer missing genotypes and carrier probabilities estimated from family's genotype and phenotype information or from a fitted model. Plot functions include pedigrees of simulated families and predicted penetrance curves based on specified parameter values. For more information see Choi, Y.-H., Briollais, L., He, W. and Kopciuk, K. (2021) FamEvent: An R Package for Generating and Modeling Time-to-Event Data in Family Designs, Journal of Statistical Software 97 (7), 1-30.
How to cite:
Yun-Hee Choi (2016). FamEvent: Family Age-at-Onset Data Simulation and Penetrance Estimation. R package version 3.3, https://cran.r-project.org/web/packages/FamEvent. Accessed 26 Oct. 2026.
Previous versions and publish date:
1.0 (2016-02-09 09:46), 1.1 (2016-03-09 15:20), 1.2 (2016-09-30 22:58), 1.3 (2017-03-26 09:30), 2.0 (2019-03-21 06:13), 2.1 (2021-03-17 10:30), 3.0 (2022-11-17 14:00), 3.1 (2024-04-04 01:33), 3.2 (2024-07-02 21:30), (2026-07-09 08:04)
Other packages that cited FamEvent R package
View FamEvent citation profile
Other R packages that FamEvent depends, imports, suggests or enhances
Complete documentation for FamEvent
Functions, R codes and Examples using the FamEvent R package
Some associated functions: FamEvent-package . LSfam . carrierprob . fampower . penetrance . penetrance_c . penmodel . penmodel_c . penmodelem . penplot . penplot_c . plot.penmodel . plot.penmodel_c . plot.simfam . plot.simfam_c . print.penmodel . print.penmodel_c . print.summary.penmodel . print.summary.penmodel_c . simfam . simfam_c . summary.penmodel . summary.penmodel_c . summary.simfam . summary.simfam_c . 
Some associated R codes: FamilyData-internal.R . MakeRelationship.R . MakeRelationshipExtended.R . Pgene.R . carrierprob.R . carrierprobgeno.R . carrierprobgeno_rev.R . carrierprobpheno_rev.R . cumhaz.R . dlaplace.R . familyDesign.R . familyDesign_c.R . familyDesign_old.R . familyStructure.R . familyStructure_c.R . fampower.R . fgene.R . fgene_c.R . gauss.hermite.R . gh.R . hazards.R . hermite.R . integ_cgamma.R . integ_clognormal.R . integ_frailty.R . integ_nofrailty.R . inv.surv.R . inv.survp.R . inv_surv_c.R . kids.g.R . laplace.R . loglik.vec.R . loglik_frailty.R . loglik_frailty_c.R . loglik_frailty_cgamma.R . loglik_frailty_clognormal.R . loglik_frailty_corr.R . loglik_ind.R . loglik_ind_c.R . loglik_ind_vec.R . mgauss.hermite.R . numericGradient.R . numericNHessian.R . parents.g.R . penetrance.R . penetrance_c.R . penf.R . penf_c.R . penmodel.R . penmodel_c.R . penmodel_old.R . penmodel_rev.R . penmodelem.R . penplot.R . penplot_c.R . plot.penmodel.R . plot.penmodel_c.R . plot.penmodel_old.R . plot.simfam.R . plot.simfam_c.R . print.penmodel.R . print.penmodel_c.R . print.summary.penmodel.R . print.summary.penmodel_c.R . simfam.R . simfam_c.R . summary.penmodel.R . summary.penmodel_c.R . summary.simfam.R . summary.simfam_c.R . surv.dist.R . surv_dist_c.R . survp.dist.R .  Full FamEvent package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

MARSS  
Multivariate Autoregressive State-Space Modeling
The MARSS package provides maximum-likelihood parameter estimation for constrained and unconstraine ...
Download / Learn more Package Citations See dependency  
SADEG  
Stability Analysis in Differentially Expressed Genes
We analyzed the nucleotide composition of genes with a special emphasis on stability of DNA sequence ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
rts2  
Log-Gaussian Cox Process Models with Approximations
Supports modelling real-time case data to facilitate the real-time surveillance of infectious disea ...
Download / Learn more Package Citations See dependency  
LSDsensitivity  
Sensitivity Analysis Tools for 'LSD' Simulations
Tools for sensitivity analysis of LSD simulation models. Reads object-oriented data produced by LSD ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA