R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
EnvNJ
View on CRAN: Click
here
Download and install EnvNJ package within the R console
Install from CRAN:
install.packages("EnvNJ")
Install from Github:
library("remotes")
install_github("cran/EnvNJ") Install by package version:
library("remotes")
install_version("EnvNJ", "0.1.3") Attach the package and use:
library("EnvNJ")
Maintained by
Juan Carlos Aledo
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-05-31
Latest Update: 2021-09-27
Description:
Contains utilities for the analysis of protein sequences in a phylogenetic context.
Allows the generation of phylogenetic trees base on protein sequences in an alignment-independent way.
Two different methods have been implemented. One approach is based on the frequency analysis of n-grams,
previously described in Stuart et al. (2002) . The other approach is based on the species-specific neighborhood preference around amino acids. Features include the conversion of a protein set into a vector
reflecting these neighborhood preferences, pairwise distances (dissimilarity) between these vectors,
and the generation of trees based on these distance matrices.
How to cite:
Juan Carlos Aledo (2021). EnvNJ: Whole Genome Phylogenies Using Sequence Environments. R package version 0.1.3, https://cran.r-project.org/web/packages/EnvNJ. Accessed 26 Oct. 2026.
Previous versions and publish date:
0.1.2 (2021-05-31 09:00), (2026-07-09 08:03)
Other packages that cited EnvNJ R package
View EnvNJ citation profile
Other R packages that EnvNJ depends,
imports, suggests or enhances
Complete documentation for EnvNJ
Functions, R codes and Examples using
the EnvNJ R package
Some associated functions: aa.at . aa.comp . aaf . bovids . cos2dis . d.phy2df . df2fasta . env.extract . env.fasta . env.matrices . env.sp . envfascpp . envnj . fastaconc . metrics . msa.merge . msa.tree . ncd . ncdnj . ngraMatrix . ngram . otu.space . otu.vector . reyes . svdgram . vcos . vdis . vect2tree . vtree .
Some associated R codes: ancillary.R . bovids.R . dataprep.R . envcoding.R . envfas.R . envnj.R . metrics.R . msa.R . ncdnj.R . ngram.R . reyes.R . Full EnvNJ package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
MARSS
The MARSS package provides maximum-likelihood parameter
estimation for constrained and unconstraine ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Elizabeth Eli Holmes (view profile)
rts2
Supports modelling real-time case data to facilitate the real-time
surveillance of infectious disea ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Sam Watson (view profile)
SADEG
We analyzed the nucleotide composition of genes with a special emphasis on stability of DNA sequence ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Babak Khorsand (view profile)
LSDsensitivity
Tools for sensitivity analysis of LSD simulation models. Reads object-oriented data produced by LSD ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Marcelo C. Pereira (view profile)
29,218
R Packages
247,686
Dependencies
77,281
Author Associations
29,219
Publication Badges
