R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
EnvNJ
View on CRAN: Click
here
Download and install EnvNJ package within the R console
Install from CRAN:
install.packages("EnvNJ")
Install from Github:
library("remotes")
install_github("cran/EnvNJ") Install by package version:
library("remotes")
install_version("EnvNJ", "0.1.3") Attach the package and use:
library("EnvNJ")
Maintained by
Juan Carlos Aledo
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-05-31
Latest Update: 2021-09-27
Description:
Contains utilities for the analysis of protein sequences in a phylogenetic context.
Allows the generation of phylogenetic trees base on protein sequences in an alignment-independent way.
Two different methods have been implemented. One approach is based on the frequency analysis of n-grams,
previously described in Stuart et al. (2002) . The other approach is based on the species-specific neighborhood preference around amino acids. Features include the conversion of a protein set into a vector
reflecting these neighborhood preferences, pairwise distances (dissimilarity) between these vectors,
and the generation of trees based on these distance matrices.
How to cite:
Juan Carlos Aledo (2021). EnvNJ: Whole Genome Phylogenies Using Sequence Environments. R package version 0.1.3, https://cran.r-project.org/web/packages/EnvNJ. Accessed 05 Jun. 2026.
Previous versions and publish date:
0.1.2 (2021-05-31 09:00)
Other packages that cited EnvNJ R package
View EnvNJ citation profile
Other R packages that EnvNJ depends,
imports, suggests or enhances
Complete documentation for EnvNJ
Functions, R codes and Examples using
the EnvNJ R package
Some associated functions: aa.at . aa.comp . aaf . bovids . cos2dis . d.phy2df . df2fasta . env.extract . env.fasta . env.matrices . env.sp . envfascpp . envnj . fastaconc . metrics . msa.merge . msa.tree . ncd . ncdnj . ngraMatrix . ngram . otu.space . otu.vector . reyes . svdgram . vcos . vdis . vect2tree . vtree .
Some associated R codes: ancillary.R . bovids.R . dataprep.R . envcoding.R . envfas.R . envnj.R . metrics.R . msa.R . ncdnj.R . ngram.R . reyes.R . Full EnvNJ package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
msm
Functions for fitting continuous-time Markov and hidden
Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Christopher Jackson (view profile)
ibb
Call wrappers for Istanbul Metropolitan
Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Berk Orbay (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
crossurr
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Denis Agniel (view profile)
envirem
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pascal Title (view profile)
27,268
R Packages
233,548
Dependencies
72,590
Author Associations
27,205
Publication Badges
