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AnanseSeurat  

Construct ANANSE GRN-Analysis Seurat
View on CRAN: Click here


Download and install AnanseSeurat package within the R console
Install from CRAN:
install.packages("AnanseSeurat")

Install from Github:
library("remotes")
install_github("cran/AnanseSeurat")

Install by package version:
library("remotes")
install_version("AnanseSeurat", "1.2.0")



Attach the package and use:
library("AnanseSeurat")
Maintained by
Jos Smits
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-01-25
Latest Update: 2023-11-11
Description:
Enables gene regulatory network (GRN) analysis on single cell clusters, using the GRN analysis software 'ANANSE', Xu et al.(2021) . Export data from 'Seurat' objects, for GRN analysis by 'ANANSE' implemented in 'snakemake'. Finally, incorporate results for visualization and interpretation.
How to cite:
Jos Smits (2023). AnanseSeurat: Construct ANANSE GRN-Analysis Seurat. R package version 1.2.0, https://cran.r-project.org/web/packages/AnanseSeurat. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.1.0 (2023-01-25 11:10)
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