R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
Allspice
View on CRAN: Click
here
Download and install Allspice package within the R console
Install from CRAN:
install.packages("Allspice")
Install from Github:
library("remotes")
install_github("cran/Allspice") Install by package version:
library("remotes")
install_version("Allspice", "1.0.7") Attach the package and use:
library("Allspice")
Maintained by
Ville-Petteri Makinen
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-02-18
Latest Update: 2023-01-20
Description:
We developed a lightweight machine learning tool for RNA profiling of acute lymphoblastic leukemia (ALL), however, it can be used for any problem where multiple classes need to be identified from multi-dimensional data. The methodology is described in Makinen V-P, Rehn J, Breen J, Yeung D, White DL (2022) Multi-cohort transcriptomic subtyping of B-cell acute lymphoblastic leukemia, International Journal of Molecular Sciences 23:4574, . The classifier contains optimized mean profiles of the classes (centroids) as observed in the training data, and new samples are matched to these centroids using the shortest Euclidean distance. Centroids derived from a dataset of 1,598 ALL patients are included, but users can train the models with their own data as well. The output includes both numerical and visual presentations of the classification results. Samples with mixed features from multiple classes or atypical values are also identified.
How to cite:
Ville-Petteri Makinen (2022). Allspice: RNA-Seq Profile Classifier. R package version 1.0.7, https://cran.r-project.org/web/packages/Allspice. Accessed 25 Aug. 2026.
Previous versions and publish date:
Other packages that cited Allspice R package
View Allspice citation profile
Other R packages that Allspice depends,
imports, suggests or enhances
Complete documentation for Allspice
Functions, R codes and Examples using
the Allspice R package
Some associated functions: Asset.assemble . Asset.classify . Asset.configuration . Asset.export . Asset.nomenclature . Asset.normalize . Asset . Asset.standardize . Asset.visuals . Classifier.covariates . Classifier.information . Classifier . Classifier.predictions . Classifier.profiles . Classifier.report . Classifier.scores . bcellALL .
Some associated R codes: Asset.R . Asset.assemble.R . Asset.classify.R . Asset.configuration.R . Asset.export.R . Asset.nomenclature.R . Asset.normalize.R . Asset.standardize.R . Asset.visuals.R . Classifier.R . Classifier.covariates.R . Classifier.information.R . Classifier.predictions.R . Classifier.profiles.R . Classifier.report.R . Classifier.scores.R . bcellALL.R . local.analyze.R . local.colormap.R . local.distances.R . local.makematrix.R . local.prune.R . local.reference.R . local.regress.R . local.statistics.R . local.summarize.R . local.translate.R . Full Allspice package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
hwep
Inference concerning equilibrium and random mating in
autopolyploids. Methods are available to test ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: David Gerard (view profile)
missDiag
Implements the computation of discrepancy statistics summarizing differences between the density of ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Moritz Marbach (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
commonsMath
'Java' JAR files for the Apache Commons Mathematics Library for use by users and other packages. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: David B. Dahl (view profile)
connectwidgets
A collection of helper functions and 'htmlwidgets' to help publishers
curate content collections on ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Brian Smith (view profile)
28,332
R Packages
239,283
Dependencies
75,113
Author Associations
28,333
Publication Badges
