Other packages > Find by keyword >

Allspice  

RNA-Seq Profile Classifier
View on CRAN: Click here


Download and install Allspice package within the R console
Install from CRAN:
install.packages("Allspice")

Install from Github:
library("remotes")
install_github("cran/Allspice")

Install by package version:
library("remotes")
install_version("Allspice", "1.0.7")



Attach the package and use:
library("Allspice")
Maintained by
Ville-Petteri Makinen
[Scholar Profile | Author Map]
First Published: 2022-02-18
Latest Update: 2023-01-20
Description:
We developed a lightweight machine learning tool for RNA profiling of acute lymphoblastic leukemia (ALL), however, it can be used for any problem where multiple classes need to be identified from multi-dimensional data. The methodology is described in Makinen V-P, Rehn J, Breen J, Yeung D, White DL (2022) Multi-cohort transcriptomic subtyping of B-cell acute lymphoblastic leukemia, International Journal of Molecular Sciences 23:4574, . The classifier contains optimized mean profiles of the classes (centroids) as observed in the training data, and new samples are matched to these centroids using the shortest Euclidean distance. Centroids derived from a dataset of 1,598 ALL patients are included, but users can train the models with their own data as well. The output includes both numerical and visual presentations of the classification results. Samples with mixed features from multiple classes or atypical values are also identified.
How to cite:
Ville-Petteri Makinen (2022). Allspice: RNA-Seq Profile Classifier. R package version 1.0.7, https://cran.r-project.org/web/packages/Allspice. Accessed 29 Mar. 2025.
Previous versions and publish date:
1.0.2 (2022-02-18 21:30), 1.0.3 (2022-02-22 10:10), 1.0.4 (2022-04-13 07:12), 1.0.5 (2022-06-11 12:40), 1.0.6 (2022-12-15 07:10)
Other packages that cited Allspice R package
View Allspice citation profile
Other R packages that Allspice depends, imports, suggests or enhances
Complete documentation for Allspice
Downloads during the last 30 days
02/2702/2803/0103/0203/0303/0403/0503/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/28Downloads for Allspice246810121416182022242628TrendBars

Today's Hot Picks in Authors and Packages

landmix  
Landmark Prediction for Mixture Data
Non-parametric prediction of survival outcomes for mixture data that incorporates covariates and a l ...
Download / Learn more Package Citations See dependency  
gglgbtq  
Show Pride on 'ggplot2' Plots
Provides multiple palettes based on pride flags with tailored themes. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA