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AMR  

Antimicrobial Resistance Data Analysis
View on CRAN: Click here


Download and install AMR package within the R console
Install from CRAN:
install.packages("AMR")

Install from Github:
library("remotes")
install_github("cran/AMR")

Install by package version:
library("remotes")
install_version("AMR", "2.1.1")



Attach the package and use:
library("AMR")
Maintained by
Matthijs S. Berends
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-02-22
Latest Update: 2023-07-16
Description:
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in .
How to cite:
Matthijs S. Berends (2018). AMR: Antimicrobial Resistance Data Analysis. R package version 2.1.1, https://cran.r-project.org/web/packages/AMR. Accessed 06 Nov. 2024.
Previous versions and publish date:
0.1.0 (2018-02-22 19:22), 0.1.1 (2018-03-14 11:19), 0.2.0 (2018-05-03 13:06), 0.3.0 (2018-08-14 13:10), 0.4.0 (2018-10-01 19:30), 0.5.0 (2018-11-30 14:40), 0.6.0 (2019-03-27 10:40), 0.6.1 (2019-03-29 13:00), 0.7.0 (2019-06-03 17:30), 0.7.1 (2019-06-23 11:20), 0.8.0 (2019-10-15 17:00), 0.9.0 (2019-11-29 21:00), 1.0.0 (2020-02-17 17:50), 1.0.1 (2020-02-23 16:10), 1.1.0 (2020-04-15 16:00), 1.2.0 (2020-05-28 15:40), 1.3.0 (2020-07-31 12:12), 1.4.0 (2020-10-08 09:30), 1.5.0 (2021-01-06 11:20), 1.6.0 (2021-03-15 01:10), 1.7.1 (2021-06-03 15:00), 1.8.0 (2022-01-07 14:53), 1.8.1 (2022-03-24 23:00), 1.8.2 (2022-09-29 13:00), 2.0.0 (2023-03-12 14:00), 2.1.0 (2023-07-16 17:30)
Other packages that cited AMR R package
View AMR citation profile
Other R packages that AMR depends, imports, suggests or enhances
Complete documentation for AMR
Functions, R codes and Examples using the AMR R package
Some associated functions: AMR-deprecated . AMR-options . AMR . WHOCC . WHONET . ab_from_text . ab_property . add_custom_antimicrobials . add_custom_microorganisms . age . age_groups . antibiogram . antibiotic_class_selectors . antibiotics . as.ab . as.av . as.disk . as.mic . as.mo . as.rsi . as.sir . atc_online . av_from_text . av_property . availability . bug_drug_combinations . catalogue_of_life . catalogue_of_life_version . clinical_breakpoints . count . custom_eucast_rules . dosage . eucast_rules . example_isolates . example_isolates_unclean . first_isolate . g.test . get_episode . ggplot_pca . ggplot_rsi . ggplot_sir . guess_ab_col . intrinsic_resistant . italicise_taxonomy . join . key_antimicrobials . kurtosis . lifecycle . like . mdro . mean_amr_distance . microorganisms.codes . microorganisms.groups . microorganisms . microorganisms.old . mo_matching_score . mo_property . mo_source . pca . plot . proportion . random . resistance_predict . rsi_translation . skewness . translate . 
Some associated R codes: aa_amr-package.R . aa_globals.R . aa_helper_functions.R . aa_helper_pm_functions.R . aa_options.R . ab.R . ab_from_text.R . ab_property.R . ab_selectors.R . age.R . amr.R . antibiogram.R . atc_online.R . av.R . av_from_text.R . av_property.R . availability.R . bug_drug_combinations.R . catalogue_of_life.R . count.R . custom_antimicrobials.R . custom_eucast_rules.R . custom_microorganisms.R . data.R . deprecated.R . disk.R . episode.R . eucast_rules.R . first_isolate.R . g.test.R . get_episode.R . ggplot_pca.R . ggplot_rsi.R . ggplot_sir.R . guess_ab_col.R . italicise_taxonomy.R . join_microorganisms.R . key_antimicrobials.R . kurtosis.R . lifecycle.R . like.R . mdro.R . mean_amr_distance.R . mic.R . mo.R . mo_matching_score.R . mo_property.R . mo_source.R . pca.R . plot.R . proportion.R . random.R . resistance_predict.R . rsi.R . rsi_calc.R . rsi_df.R . sir.R . sir_calc.R . sir_df.R . skewness.R . translate.R . vctrs.R . whocc.R . zz_deprecated.R . zzz.R .  Full AMR package functions and examples
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