Other packages > Find by keyword >

treestats  

Phylogenetic Tree Statistics
View on CRAN: Click here


Download and install treestats package within the R console
Install from CRAN:
install.packages("treestats")

Install from Github:
library("remotes")
install_github("cran/treestats")

Install by package version:
library("remotes")
install_version("treestats", "1.70.8")



Attach the package and use:
library("treestats")
Maintained by
Thijs Janzen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-01-12
Latest Update: 2024-08-26
Description:
Collection of phylogenetic tree statistics, collected throughout the literature. All functions have been written to maximize computation speed. The package includes umbrella functions to calculate all statistics, all balance associated statistics, or all branching time related statistics. Furthermore, the 'treestats' package supports summary statistic calculations on Ltables, provides speed-improved coding of branching times, Ltable conversion and includes algorithms to create intermediately balanced trees. Full description can be found in Janzen (2023) <doi:10.1101/2024.01.24.576848>.
How to cite:
Thijs Janzen (2024). treestats: Phylogenetic Tree Statistics. R package version 1.70.8, https://cran.r-project.org/web/packages/treestats. Accessed 26 Aug. 2026.
Previous versions and publish date:
(2026-08-24 14:00), 1.0.3 (2024-01-12 17:30), 1.0.5 (2024-01-30 16:50), 1.70.4 (2024-07-17 14:10), 1.70.5 (2024-08-26 08:30), 1.70.7 (2025-09-11 15:20), 1.70.8 (2025-11-12 07:20), 1.70.11 (2026-05-20 16:20), 1.71.12 (2026-06-16 13:50)
Other packages that cited treestats R package
View treestats citation profile
Other R packages that treestats depends, imports, suggests or enhances
Complete documentation for treestats
Functions, R codes and Examples using the treestats R package
Some associated functions: ILnumber . area_per_pair . average_leaf_depth . avg_ladder . b1 . b2 . beta_statistic . blum . branching_times . calc_all_stats . calc_balance_stats . calc_brts_stats . cherries . colless . crown_age . diameter . eigen_vector . entropy_j . ew_colless . gamma_statistic . imbalance_steps . j_one . l_to_phylo . laplacian_spectrum . list_statistics . ltable_to_newick . make_unbalanced_tree . max_betweenness . max_closeness . max_del_width . max_depth . max_ladder . max_width . mean_branch_length . mean_branch_length_ext . mean_branch_length_int . mean_i . mean_pair_dist . mntd . nLTT . nLTT_base . number_of_lineages . phylo_to_l . phylogenetic_diversity . pigot_rho . pitchforks . prep_lapl_spec . psv . rebase_ltable . rogers . rquartet . sackin . stairs . stairs2 . sym_nodes . tot_coph . tree_height . treestats-package . var_branch_length . var_branch_length_ext . var_branch_length_int . var_leaf_depth . var_pair_dist . wiener . 
Some associated R codes: ILnumber.R . Ibased.R . J_stat.R . L2phylo.R . RcppExports.R . area_per_pair.R . average_leaf_depth.R . avgLadder.R . b1.R . b2.R . beta.R . blum.R . branching_times.R . calc_all_stats.R . calc_balance_stats.R . calc_brts_stats.R . cherries.R . colless.R . crown_age.R . diameter.R . eigenvector.R . gamma.R . imbal_steps.R . j_one_stat.R . list_statistics.R . make_unbalanced_tree.R . max_betweenness.R . max_closeness.R . max_del_width.R . max_depth.R . max_ladder.R . max_width.R . mean_branch_length.R . mean_pair_dist.R . mntd.R . nLTT.R . number_of_lineages.R . phylogenetic_diversity.R . pigot_rho.R . pitchforks.R . psv.R . rebase_ltable.R . rogers.R . rpanda.R . rquartet.R . sackin.R . stairs.R . sym_nodes.R . tot_coph.R . util.R . var_leaf_depth.R . var_pair_dist.R . wiener.R .  Full treestats package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

clinUtils  
General Utility Functions for Analysis of Clinical Data
Utility functions to facilitate the import, the reporting and analysis of clinical data. Example ...
Download / Learn more Package Citations See dependency  
RCytoGPS  
Using Cytogenetics Data in R
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then imp ...
Download / Learn more Package Citations See dependency  
SelvarMix  
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
Performs a regularization approach to variable selection in themodel-based clustering and classifica ...
Download / Learn more Package Citations See dependency  
leafgl  
High-Performance 'WebGl' Rendering for Package 'leaflet'
Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript l ...
Download / Learn more Package Citations See dependency  
ncodeR  
Techniques for Automated Classifiers
A set of techniques that can be used to develop, validate, and implement automated classifiers. A po ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA