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treestats
View on CRAN: Click
here
Download and install treestats package within the R console
Install from CRAN:
install.packages("treestats")
Install from Github:
library("remotes")
install_github("cran/treestats")
Install by package version:
library("remotes")
install_version("treestats", "1.0.5")
Attach the package and use:
library("treestats")
Maintained by
Thijs Janzen
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-01-12
Latest Update: 2024-01-30
Description:
Collection of phylogenetic tree statistics, collected throughout the literature. All functions have been written to maximize computation speed. The package includes umbrella functions to calculate all statistics, all balance associated statistics, or all branching time related statistics. Furthermore, the 'treestats' package supports summary statistic calculations on Ltables, provides speed-improved coding of branching times, Ltable conversion and includes algorithms to create intermediately balanced trees. Full description can be found in Janzen (2023) <doi:10.1101/2024.01.24.576848>.
How to cite:
Thijs Janzen (2024). treestats: Phylogenetic Tree Statistics. R package version 1.0.5, https://cran.r-project.org/web/packages/treestats
Previous versions and publish date:
1.0.3 (2024-01-12 17:30)
Other packages that cited treestats R package
View treestats citation profile
Other R packages that treestats depends,
imports, suggests or enhances
Functions, R codes and Examples using
the treestats R package
Some associated functions: ILnumber . area_per_pair . average_leaf_depth . avg_ladder . b1 . b2 . beta_statistic . blum . branching_times . calc_all_stats . calc_balance_stats . calc_brts_stats . cherries . colless . crown_age . diameter . eigen_vector . entropy_j . ew_colless . gamma_statistic . imbalance_steps . j_one . l_to_phylo . laplacian_spectrum . list_statistics . ltable_to_newick . make_unbalanced_tree . max_betweenness . max_closeness . max_del_width . max_depth . max_ladder . max_width . mean_branch_length . mean_branch_length_ext . mean_branch_length_int . mean_i . mean_pair_dist . mntd . nLTT . nLTT_base . number_of_lineages . phylo_to_l . phylogenetic_diversity . pigot_rho . pitchforks . prep_lapl_spec . psv . rebase_ltable . rogers . rquartet . sackin . stairs . stairs2 . sym_nodes . tot_coph . tree_height . treestats-package . var_branch_length . var_branch_length_ext . var_branch_length_int . var_leaf_depth . var_pair_dist . wiener .
Some associated R codes: ILnumber.R . Ibased.R . J_stat.R . L2phylo.R . RcppExports.R . area_per_pair.R . average_leaf_depth.R . avgLadder.R . b1.R . b2.R . beta.R . blum.R . branching_times.R . calc_all_stats.R . calc_balance_stats.R . calc_brts_stats.R . cherries.R . colless.R . crown_age.R . diameter.R . eigenvector.R . gamma.R . imbal_steps.R . j_one_stat.R . list_statistics.R . make_unbalanced_tree.R . max_betweenness.R . max_closeness.R . max_del_width.R . max_depth.R . max_ladder.R . max_width.R . mean_branch_length.R . mean_pair_dist.R . mntd.R . nLTT.R . number_of_lineages.R . phylogenetic_diversity.R . pigot_rho.R . pitchforks.R . psv.R . rebase_ltable.R . rogers.R . rpanda.R . rquartet.R . sackin.R . stairs.R . sym_nodes.R . tot_coph.R . util.R . var_leaf_depth.R . var_pair_dist.R . wiener.R . Full treestats package functions and examples
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