Other packages > Find by keyword >

treestats  

Phylogenetic Tree Statistics
View on CRAN: Click here


Download and install treestats package within the R console
Install from CRAN:
install.packages("treestats")

Install from Github:
library("remotes")
install_github("cran/treestats")

Install by package version:
library("remotes")
install_version("treestats", "1.70.5")



Attach the package and use:
library("treestats")
Maintained by
Thijs Janzen
[Scholar Profile | Author Map]
First Published: 2024-01-12
Latest Update: 2024-01-30
Description:
Collection of phylogenetic tree statistics, collected throughout the literature. All functions have been written to maximize computation speed. The package includes umbrella functions to calculate all statistics, all balance associated statistics, or all branching time related statistics. Furthermore, the 'treestats' package supports summary statistic calculations on Ltables, provides speed-improved coding of branching times, Ltable conversion and includes algorithms to create intermediately balanced trees. Full description can be found in Janzen (2023) <doi:10.1101/2024.01.24.576848>.
How to cite:
Thijs Janzen (2024). treestats: Phylogenetic Tree Statistics. R package version 1.70.5, https://cran.r-project.org/web/packages/treestats. Accessed 05 Apr. 2025.
Previous versions and publish date:
1.0.3 (2024-01-12 17:30), 1.0.5 (2024-01-30 16:50), 1.70.4 (2024-07-17 14:10)
Other packages that cited treestats R package
View treestats citation profile
Other R packages that treestats depends, imports, suggests or enhances
Complete documentation for treestats
Functions, R codes and Examples using the treestats R package
Some associated functions: ILnumber . area_per_pair . average_leaf_depth . avg_ladder . b1 . b2 . beta_statistic . blum . branching_times . calc_all_stats . calc_balance_stats . calc_brts_stats . cherries . colless . crown_age . diameter . eigen_vector . entropy_j . ew_colless . gamma_statistic . imbalance_steps . j_one . l_to_phylo . laplacian_spectrum . list_statistics . ltable_to_newick . make_unbalanced_tree . max_betweenness . max_closeness . max_del_width . max_depth . max_ladder . max_width . mean_branch_length . mean_branch_length_ext . mean_branch_length_int . mean_i . mean_pair_dist . mntd . nLTT . nLTT_base . number_of_lineages . phylo_to_l . phylogenetic_diversity . pigot_rho . pitchforks . prep_lapl_spec . psv . rebase_ltable . rogers . rquartet . sackin . stairs . stairs2 . sym_nodes . tot_coph . tree_height . treestats-package . var_branch_length . var_branch_length_ext . var_branch_length_int . var_leaf_depth . var_pair_dist . wiener . 
Some associated R codes: ILnumber.R . Ibased.R . J_stat.R . L2phylo.R . RcppExports.R . area_per_pair.R . average_leaf_depth.R . avgLadder.R . b1.R . b2.R . beta.R . blum.R . branching_times.R . calc_all_stats.R . calc_balance_stats.R . calc_brts_stats.R . cherries.R . colless.R . crown_age.R . diameter.R . eigenvector.R . gamma.R . imbal_steps.R . j_one_stat.R . list_statistics.R . make_unbalanced_tree.R . max_betweenness.R . max_closeness.R . max_del_width.R . max_depth.R . max_ladder.R . max_width.R . mean_branch_length.R . mean_pair_dist.R . mntd.R . nLTT.R . number_of_lineages.R . phylogenetic_diversity.R . pigot_rho.R . pitchforks.R . psv.R . rebase_ltable.R . rogers.R . rpanda.R . rquartet.R . sackin.R . stairs.R . sym_nodes.R . tot_coph.R . util.R . var_leaf_depth.R . var_pair_dist.R . wiener.R .  Full treestats package functions and examples
Downloads during the last 30 days
03/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/03Downloads for treestats051015202530TrendBars

Today's Hot Picks in Authors and Packages

IGST  
Informative Gene Selection Tool
Mining informative genes with certain biological meanings are important for clinical diagnosis of di ...
Download / Learn more Package Citations See dependency  
gllvm  
Generalized Linear Latent Variable Models
Analysis of multivariate data using generalized linear latent variable models (gllvm). Estimation i ...
Download / Learn more Package Citations See dependency  
whitestrap  
White Test and Bootstrapped White Test for Heteroskedasticity
Formal implementation of White test of heteroskedasticity and a bootstrapped version of it, develope ...
Download / Learn more Package Citations See dependency  
deepdive  
Deep Learning for General Purpose
Aims to provide simple intuitive functions to create quick prototypes of artificial neural network o ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
leapp  
Latent Effect Adjustment After Primary Projection
These functions take a gene expression value matrix, a primary covariate vector, an additional know ...
Download / Learn more Package Citations See dependency  

23,990

R Packages

207,311

Dependencies

64,809

Author Associations

23,991

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA