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noisyr
View on CRAN: Click
here
Download and install noisyr package within the R console
Install from CRAN:
install.packages("noisyr")
Install from Github:
library("remotes")
install_github("cran/noisyr")
Install by package version:
library("remotes")
install_version("noisyr", "1.0.0")
Attach the package and use:
library("noisyr")
Maintained by
Ilias Moutsopoulos
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-01-06
Latest Update: 2021-04-16
Description:
Quantifies and removes technical noise from high-throughput
sequencing data. Two approaches are used, one based on the count
matrix, and one using the alignment BAM files directly.
Contains several options for every step of the process, as well
as tools to quality check and assess the stability of output.
How to cite:
Ilias Moutsopoulos (2021). noisyr: Noise Quantification in High Throughput Sequencing Output. R package version 1.0.0, https://cran.r-project.org/web/packages/noisyr. Accessed 10 Jan. 2025.
Previous versions and publish date:
0.1.0 (2021-01-06 10:50)
Other packages that cited noisyr R package
View noisyr citation profile
Other R packages that noisyr depends,
imports, suggests or enhances
Complete documentation for noisyr
Functions, R codes and Examples using
the noisyr R package
Some associated functions: calculate_expression_profile . calculate_expression_similarity_counts . calculate_expression_similarity_transcript . calculate_first_minimum_density . calculate_noise_threshold . calculate_noise_threshold_method_statistics . cast_gtf_to_genes . cast_matrix_to_numeric . filter_genes_transcript . get_methods_calculate_noise_threshold . get_methods_correlation_distance . noisyr . noisyr_counts . noisyr_transcript . optimise_window_length . plot_expression_similarity . remove_noise_from_bams . remove_noise_from_matrix .
Some associated R codes: calculate_expression_profile.R . calculate_expression_similarity_counts.R . calculate_expression_similarity_transcript.R . calculate_first_minimum_density.R . calculate_noise_threshold.R . calculate_noise_threshold_method_statistics.R . cast_gtf_to_genes.R . cast_matrix_to_numeric.R . filter_genes_transcript.R . get_methods_calculate_noise_threshold.R . get_methods_correlation_distance.R . noisyr.R . noisyr_counts.R . noisyr_transcript.R . optimise_window_length.R . plot_expression_similarity.R . remove_noise_from_bams.R . remove_noise_from_matrix.R . Full noisyr package functions and examples
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