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toolStability
View on CRAN: Click
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Download and install toolStability package within the R console
Install from CRAN:
install.packages("toolStability")
Install from Github:
library("remotes")
install_github("cran/toolStability")
Install by package version:
library("remotes")
install_version("toolStability", "0.1.2")
Attach the package and use:
library("toolStability")
Maintained by
Tien-Cheng Wang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-12-22
Latest Update: 2023-03-13
Description:
Tools to calculate stability indices with parametric, non-parametric and probabilistic approaches. The basic data format requirement for 'toolStability' is a data frame with 3 columns including numeric trait values, genotype,and environmental labels. Output format of each function is the dataframe with chosen stability index for each genotype. Function "table_stability" offers the summary table of all stability indices in this package. This R package toolStability is part of the main publication: Wang, Casadebaig and Chen (2023) <doi:10.1007/s00122-023-04264-7>. Analysis pipeline for main publication can be found on github: <https://github.com/Illustratien/Wang_2023_TAAG/tree/V1.0.0>. Sample dataset in this package is derived from another publication: Casadebaig P, Zheng B, Chapman S et al. (2016) <doi:10.1371/journal.pone.0146385>. For detailed documentation of dataset, please see on Zenodo <doi:10.5281/zenodo.4729636>. Indices used in this package are from: Döring TF, Reckling M (2018) <doi:10.1016/j.eja.2018.06.007>. Eberhart SA, Russell WA (1966) <doi:10.2135/cropsci1966.0011183X000600010011x>. Eskridge KM (1990) <doi:10.2135/cropsci1990.0011183X003000020025x>. Finlay KW, Wilkinson GN (1963) <doi:10.1071/AR9630742>. Hanson WD (1970) Genotypic stability. <doi:10.1007/BF00285245>. Lin CS, Binns MR (1988) <https://cdnsciencepub.com/doi/abs/10.4141/cjps88-018>. Nassar R, Hühn M (1987). Pinthus MJ (1973) <doi:10.1007/BF00021563>. Römer T (1917). Shukla GK (1972). Wricke G (1962).
How to cite:
Tien-Cheng Wang (2021). toolStability: Tool for Stability Indices Calculation. R package version 0.1.2, https://cran.r-project.org/web/packages/toolStability. Accessed 22 Dec. 2024.
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Complete documentation for toolStability
Functions, R codes and Examples using
the toolStability R package
Some associated functions: Data . adjusted_coefficient_of_variation . coefficient_of_determination . coefficient_of_regression . deviation_mean_squares . ecovalence . environmental_variance . genotypic_stability . genotypic_superiority_measure . safety_first_index . stability_variance . table_stability . toolStability-package . variance_of_rank .
Some associated R codes: Data.R . adjusted_coefficient_of_variation.R . coefficient_of_determination.R . coefficient_of_regression.R . deviation_mean_squares.R . ecovalence.R . environmental_variance.R . genotypic_stability.R . genotypic_superiority_measure.R . safety_first_index.R . stability_variance.R . table_stability.R . toolStability-package.R . variance_of_rank.R . Full toolStability package functions and examples
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