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tcgaViz
View on CRAN: Click
here
Download and install tcgaViz package within the R console
Install from CRAN:
install.packages("tcgaViz")
Install from Github:
library("remotes")
install_github("cran/tcgaViz") Install by package version:
library("remotes")
install_version("tcgaViz", "1.0.2") Attach the package and use:
library("tcgaViz")
Maintained by
Etienne Camenen
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-28
Latest Update: 2023-04-04
Description:
Differential analysis of tumor tissue immune cell type abundance based on RNA-seq gene-level expression from The Cancer Genome Atlas (TCGA; <https://pancanatlas.xenahubs.net>) database.
How to cite:
Etienne Camenen (2022). tcgaViz: Visualization Tool for the Cancer Genome Atlas Program (TCGA). R package version 1.0.2, https://cran.r-project.org/web/packages/tcgaViz. Accessed 14 Jun. 2026.
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Other R packages that tcgaViz depends,
imports, suggests or enhances
Complete documentation for tcgaViz
Functions, R codes and Examples using
the tcgaViz R package
Some associated functions: calculate_pvalue . convert2biodata . convert_biodata . plot.biodata . run_app . tcga . tcgaViz-package .
Some associated R codes: app_config.R . app_server.R . app_ui.R . app_utils.R . calculate_pvalue.R . check_utils.R . convert2biodata.R . convert_biodata.R . description_utils.R . globals.R . plot_distribution.R . plot_dynamic.R . plot_utils.R . print.biostats.R . remove_similar_type_levels.R . run_app.R . tcga.R . tcgaViz-package.R . Full tcgaViz package functions and examples
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