Other packages > Find by keyword >

TreeDimensionTest  

Trajectory Presence and Heterogeneity in Multivariate Data
View on CRAN: Click here


Download and install TreeDimensionTest package within the R console
Install from CRAN:
install.packages("TreeDimensionTest")

Install from Github:
library("remotes")
install_github("cran/TreeDimensionTest")

Install by package version:
library("remotes")
install_version("TreeDimensionTest", "0.0.2")



Attach the package and use:
library("TreeDimensionTest")
Maintained by
Joe Song
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-01-20
Latest Update: 2022-03-12
Description:
Testing for trajectory presence and heterogeneity on multivariate data. Two statistical methods (Tenha & Song 2022) <doi:10.1371/journal.pcbi.1009829> are implemented. The tree dimension test quantifies the statistical evidence for trajectory presence. The subset specificity measure summarizes pattern heterogeneity using the minimum subtree cover. There is no user tunable parameters for either method. Examples are included to illustrate how to use the methods on single-cell data for studying gene and pathway expression dynamics and pathway expression specificity.
How to cite:
Joe Song (2022). TreeDimensionTest: Trajectory Presence and Heterogeneity in Multivariate Data. R package version 0.0.2, https://cran.r-project.org/web/packages/TreeDimensionTest. Accessed 10 Mar. 2026.
Previous versions and publish date:
0.0.1 (2022-01-20 09:52)
Other packages that cited TreeDimensionTest R package
View TreeDimensionTest citation profile
Other R packages that TreeDimensionTest depends, imports, suggests or enhances
Complete documentation for TreeDimensionTest
Functions, R codes and Examples using the TreeDimensionTest R package
Some associated functions: compute.stats . empirical.distributions . plot.test . separability . test.trajectory . 
Some associated R codes: RcppExports.R . tree_dim.R .  Full TreeDimensionTest package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  
gena  
Genetic Algorithm and Particle Swarm Optimization
Implements genetic algorithm and particle swarm algorithm for real-valued functions. Various modific ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
plyr  
Tools for Splitting, Applying and Combining Data
A set of tools that solves a common set of problems: you need to break a big problem down into mana ...
Download / Learn more Package Citations See dependency  

26,293

R Packages

225,784

Dependencies

70,376

Author Associations

26,294

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA