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seq2R  

Simple Method to Detect Compositional Changes in Genomic Sequences
View on CRAN: Click here


Download and install seq2R package within the R console
Install from CRAN:
install.packages("seq2R")

Install from Github:
library("remotes")
install_github("cran/seq2R")

Install by package version:
library("remotes")
install_version("seq2R", "2.0.1")



Attach the package and use:
library("seq2R")
Maintained by
Nora M. Villanueva
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-08-23
Latest Update: 2023-09-26
Description:
This software is useful for loading '.fasta' or '.gbk' files, and for retrieving sequences from 'GenBank' dataset . This package allows to detect differences or asymmetries based on nucleotide composition by using local linear kernel smoothers. Also, it is possible to draw inference about critical points (i. e. maximum or minimum points) related with the derivative curves. Additionally, bootstrap methods have been used for estimating confidence intervals and speed computational techniques (binning techniques) have been implemented in 'seq2R'.
How to cite:
Nora M. Villanueva (2012). seq2R: Simple Method to Detect Compositional Changes in Genomic Sequences. R package version 2.0.1, https://cran.r-project.org/web/packages/seq2R. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0 (2012-08-23 15:47), 1.1.0 (2023-01-06 12:10), 2.0.0 (2023-04-20 18:50)
Other packages that cited seq2R R package
View seq2R citation profile
Other R packages that seq2R depends, imports, suggests or enhances
Complete documentation for seq2R
Functions, R codes and Examples using the seq2R R package
Some associated functions: change.binary . change.points . critical . mtDNAhum . plot.change.points . print.change.points . read.all . read.genbank . seq2R-package . 
Some associated R codes: change.binary.R . change.points.R . critical.R . plot.change.points.R . print.change.points.R . read.all.R . read.genbank.R .  Full seq2R package functions and examples
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