Other packages > Find by keyword >

scRNAstat  

A Pipeline to Process Single Cell RNAseq Data
View on CRAN: Click here


Download and install scRNAstat package within the R console
Install from CRAN:
install.packages("scRNAstat")

Install from Github:
library("remotes")
install_github("cran/scRNAstat")

Install by package version:
library("remotes")
install_version("scRNAstat", "0.1.1.1")



Attach the package and use:
library("scRNAstat")
Maintained by
Yonghe Xia
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-09-22
Latest Update: 2025-03-08
Description:
A pipeline that can process single or multiple Single Cell RNAseq samples primarily specializes in Clustering and Dimensionality Reduction. Meanwhile we use common cell type marker genes for T cells, B cells, Myeloid cells, Epithelial cells, and stromal cells (Fiboblast, Endothelial cells, Pericyte, Smooth muscle cells) to visualize the Seurat clusters, to facilitate labeling them by biological names. Once users named each cluster, they can evaluate the quality of them again and find the de novo marker genes also.
How to cite:
Yonghe Xia (2021). scRNAstat: A Pipeline to Process Single Cell RNAseq Data. R package version 0.1.1.1, https://cran.r-project.org/web/packages/scRNAstat. Accessed 06 Mar. 2026.
Previous versions and publish date:
0.1.1 (2021-09-22 10:10)
Other packages that cited scRNAstat R package
View scRNAstat citation profile
Other R packages that scRNAstat depends, imports, suggests or enhances
Complete documentation for scRNAstat
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

mlr3viz  
Visualizations for 'mlr3'
Visualization package of the 'mlr3' ecosystem. It features plots for mlr3 objects such as tasks, le ...
Download / Learn more Package Citations See dependency  
openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  
lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  
EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
DatabionicSwarm  
Swarm Intelligence for Self-Organized Clustering
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA