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scRNAstat
View on CRAN: Click
here
Download and install scRNAstat package within the R console
Install from CRAN:
install.packages("scRNAstat")
Install from Github:
library("remotes")
install_github("cran/scRNAstat")
Install by package version:
library("remotes")
install_version("scRNAstat", "0.1.1.1")
Attach the package and use:
library("scRNAstat")
Maintained by
Yonghe Xia
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.scRNAstat . scRNAstat results . scRNAstat.pdf . scRNAstat_0.1.1.1.tar.gz . scRNAstat_0.1.1.1.zip . scRNAstat_0.1.1.1.zip . scRNAstat_0.1.1.1.zip . scRNAstat_0.1.1.1.tgz . scRNAstat_0.1.1.1.tgz . scRNAstat_0.1.1.1.tgz . scRNAstat_0.1.1.1.tgz . scRNAstat archive . https://CRAN.R-project.org/package=scRNAstat .
First Published: 2021-09-22
Latest Update: 2021-09-22
Description:
A pipeline that can process single or multiple Single Cell RNAseq
samples primarily specializes in Clustering and Dimensionality Reduction.
Meanwhile we use common cell type marker genes for T cells, B cells, Myeloid cells,
Epithelial cells, and stromal cells (Fiboblast, Endothelial cells, Pericyte,
Smooth muscle cells) to visualize the Seurat clusters, to facilitate labeling
them by biological names. Once users named each cluster, they can evaluate the
quality of them again and find the de novo marker genes also.
How to cite:
Yonghe Xia (2021). scRNAstat: A Pipeline to Process Single Cell RNAseq Data. R package version 0.1.1.1, https://cran.r-project.org/web/packages/scRNAstat. Accessed 01 May. 2025.
Previous versions and publish date:
0.1.1 (2021-09-22 10:10)
Other packages that cited scRNAstat R package
View scRNAstat citation profile
Other R packages that scRNAstat depends,
imports, suggests or enhances
Complete documentation for scRNAstat
Functions, R codes and Examples using
the scRNAstat R package
Some associated functions: AJ064_small_last_sce . AJ064_small_sce . basic_filter . basic_find_markers . basic_markers . basic_qc . basic_workflow . pipe .
Some associated R codes: AJ064_small_last_sce.R . AJ064_small_sce.R . basic_filter.R . basic_find_markers.R . basic_markers.R . basic_qc.R . basic_workflow.R . global.R . utils-pipe.R . Full scRNAstat package functions and examples
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