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fbar
View on CRAN: Click
here
Download and install fbar package within the R console
Install from CRAN:
install.packages("fbar")
Install from Github:
library("remotes")
install_github("cran/fbar")
Install by package version:
library("remotes")
install_version("fbar", "0.6.0")
Attach the package and use:
library("fbar")
Maintained by
Max Conway
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-12-20
Latest Update: 2020-09-02
Description:
A toolkit for Flux Balance Analysis and related
metabolic modeling techniques. Functions are provided for: parsing
models in tabular format, converting parsed metabolic models to input
formats for common linear programming solvers, and
evaluating and applying gene-protein-reaction mappings. In addition, there
are wrappers to parse a model, select a solver, find the metabolic fluxes,
and return the results applied to the original model. Compared to other
packages in this field, this package puts a much heavier focus on
providing reusable components that can be used in the design of new
implementation of new techniques, in particular those that involve large
parameter sweeps. For a background on the theory, see What is Flux Balance
Analysis .
How to cite:
Max Conway (2016). fbar: An Extensible Approach to Flux Balance Analysis. R package version 0.6.0, https://cran.r-project.org/web/packages/fbar
Previous versions and publish date:
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View fbar citation profile
Other R packages that fbar depends,
imports, suggests or enhances
Functions, R codes and Examples using
the fbar R package
Some associated functions: decompose_metabolites . ecoli_core . expanded_to_ROI . expanded_to_glpk . expanded_to_gurobi . expanded_to_reactiontbl . fbar . find_flux_variability_df . find_fluxes_df . gene_associate . gene_eval . get_BiGG . iJO1366 . nutrient_types . parse_met_list . reactiontbl_to_expanded . reactiontbl_to_gurobi . recompose_metabolites . split_on_arrow . validate_expanded .
Some associated R codes: convenience_wrappers.R . data.R . deprecated.R . fbar.R . gene_associate.R . gene_expression_evaluation.R . metabolite_utilities.R . parsing_and_conversion.R . utilities.R . Full fbar package functions and examples
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