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fbar  

An Extensible Approach to Flux Balance Analysis
View on CRAN: Click here


Download and install fbar package within the R console
Install from CRAN:
install.packages("fbar")

Install from Github:
library("remotes")
install_github("cran/fbar")

Install by package version:
library("remotes")
install_version("fbar", "0.6.0")



Attach the package and use:
library("fbar")
Maintained by
Max Conway
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-12-20
Latest Update: 2020-09-02
Description:
A toolkit for Flux Balance Analysis and related metabolic modeling techniques. Functions are provided for: parsing models in tabular format, converting parsed metabolic models to input formats for common linear programming solvers, and evaluating and applying gene-protein-reaction mappings. In addition, there are wrappers to parse a model, select a solver, find the metabolic fluxes, and return the results applied to the original model. Compared to other packages in this field, this package puts a much heavier focus on providing reusable components that can be used in the design of new implementation of new techniques, in particular those that involve large parameter sweeps. For a background on the theory, see What is Flux Balance Analysis .
How to cite:
Max Conway (2016). fbar: An Extensible Approach to Flux Balance Analysis. R package version 0.6.0, https://cran.r-project.org/web/packages/fbar
Previous versions and publish date:
0.1.16 (2016-12-20 02:04), 0.1.23 (2017-01-14 12:46), 0.3.3 (2017-10-18 00:56), 0.3.4 (2017-10-24 16:56), 0.4.3 (2018-04-04 05:38), 0.5.2 (2018-12-03 12:32)
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