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scPloidy  

Infer Ploidy of Single Cells
View on CRAN: Click here


Download and install scPloidy package within the R console
Install from CRAN:
install.packages("scPloidy")

Install from Github:
library("remotes")
install_github("cran/scPloidy")

Install by package version:
library("remotes")
install_version("scPloidy", "0.6.2")



Attach the package and use:
library("scPloidy")
Maintained by
Fumihiko Takeuchi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-12
Latest Update: 2024-04-28
Description:
Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data .
How to cite:
Fumihiko Takeuchi (2022). scPloidy: Infer Ploidy of Single Cells. R package version 0.6.2, https://cran.r-project.org/web/packages/scPloidy. Accessed 30 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:01), 0.3.0 (2022-09-12 09:40)
Other packages that cited scPloidy R package
View scPloidy citation profile
Other R packages that scPloidy depends, imports, suggests or enhances
Complete documentation for scPloidy
Functions, R codes and Examples using the scPloidy R package
Some associated functions: SHR_m154211 . fragmentoverlapcount . pipe . ploidy . 
Some associated R codes: ATAC-seq.R . SHR_m154211.R . utils-pipe.R .  Full scPloidy package functions and examples
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