Other packages > Find by keyword >

rubias  

Bayesian Inference from the Conditional Genetic Stock Identification Model
View on CRAN: Click here


Download and install rubias package within the R console
Install from CRAN:
install.packages("rubias")

Install from Github:
library("remotes")
install_github("cran/rubias")

Install by package version:
library("remotes")
install_version("rubias", "0.3.4")



Attach the package and use:
library("rubias")
Maintained by
Eric C. Anderson
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-01-29
Latest Update: 2024-01-24
Description:
Implements Bayesian inference for the conditional genetic stock identification model. It allows inference of mixed fisheries and also simulation of mixtures to predict accuracy. A full description of the underlying methods is available in a recently published article in the Canadian Journal of Fisheries and Aquatic Sciences: .
How to cite:
Eric C. Anderson (2018). rubias: Bayesian Inference from the Conditional Genetic Stock Identification Model. R package version 0.3.4, https://cran.r-project.org/web/packages/rubias. Accessed 06 Oct. 2026.
Previous versions and publish date:
(2026-07-09 06:54), 0.1.0 (2018-01-29 11:12), 0.2.0 (2019-02-02 20:30), 0.3.0 (2019-06-10 17:00), 0.3.1 (2020-04-02 22:10), 0.3.2 (2021-01-15 20:10), 0.3.3 (2022-02-10 01:10), 0.3.4 (2024-01-24 15:40)
Other packages that cited rubias R package
View rubias citation profile
Other R packages that rubias depends, imports, suggests or enhances
Complete documentation for rubias
Functions, R codes and Examples using the rubias R package
Some associated functions: Hasselman_sim_colls . a_freq_list . alewife . allelic_list . assess_pb_bias_correction . assess_reference_loo . assess_reference_mc . avg_coll2correctRU . blueback . bootstrap_rho . check_known_collections . check_refmix . chinook . chinook_collection_levels . chinook_mix . chinook_repunit_levels . close_matching_samples . count_missing_data . custom_pi_prior . dirch_from_allocations . dirch_from_counts . geno_logL . geno_logL_ssq . get_ploidy_from_frame . gprob_sim_gc . gprob_sim_gc_missing . gprob_sim_ind . gsi_em_1 . gsi_mcmc_1 . gsi_mcmc_fb . infer_mixture . list_diploid_params . mixture_draw . modify_scaled_likelihoods_for_known_mixture_fish . per_locus_means_and_vars . perfect_chinook . perfect_chinook_mix . pipe . rcpp_close_matchers . rcpp_indiv_specific_logl_means_and_vars . rcpp_per_locus_logls . read_gsi_sim . ref_and_mix_pipeline . reference_allele_counts . round2 . rubias . samp_from_mat . self_assign . sim_spec_examples . simulate_random_samples . small_chinook_mix . small_chinook_ref . tcf2long . tcf2param_list . tidy_mcmc_coll_rep_stuff . tidy_mcmc_pofz . tidy_pi_traces . write_gsi_sim_mixture . write_gsi_sim_reference . 
Some associated R codes: RcppExports.R . assess_pb_bias_correction.R . assess_reference_loo.R . assess_reference_mc.R . check_known_collections.R . close_matching_samples.R . count_missing_data.R . custom_pi_prior.R . data.R . data_conversion.R . eca-internal-funcs.R . import.R . infer_mixture.R . modify-scaled-likelihoods-for-known-mixture-fish.R . per_locus_means_and_vars.R . read_gsi_sim.R . rubias.R . self_assign.R . simulate_random_samples.R . simulation_pipelines.R . utilities.R . write_gsi_sim_mixture.R . write_gsi_sim_reference.R .  Full rubias package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gRim  
Graphical Interaction Models
Provides the following types of models: Models for contingency tables (i.e. log-linear models) Grap ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
gecko  
Geographical Ecology and Conservation Knowledge Online
Includes a collection of geographical analysis functions aimed primarily at ecology and conservation ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA