R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
GenomeAdapt
View on CRAN: Click
here
Download and install GenomeAdapt package within the R console
Install from CRAN:
install.packages("GenomeAdapt")
Install from Github:
library("remotes")
install_github("cran/GenomeAdapt")
Install by package version:
library("remotes")
install_version("GenomeAdapt", "1.0.0")
Attach the package and use:
library("GenomeAdapt")
Maintained by
Xinghu Qin
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
First Published: 2021-11-11
Latest Update: 2023-12-02
Description:
Portable, scalable and highly computationally efficient tool for detecting signatures of local adaptation based on multidimensional ancestry map ( _n_ X _n_ ancestry genetic trajectories, _n_ is the number of individuals). If n samples are included in the analysis, there will be n dimensional spaces that represent the common ancestry maps based on the identity-by-descent (IBD). The package calculates the correlations of loci with the common ancestry genetic maps adopting the Genomic Data Structure (GDS, Zheng et al., 2012) and suitable for millions of SNP data. Loci sharing a greater level of most recent common ancestor (MRCA) (large Z-scores) indicates a large number of individuals descend from recent common ancestors,
which signals the rapid increase in frequency of a beneficial allele due to recent positive selection. The rationale underlying this package is somewhat analogous to KLFDAPT (Qin, 2021) (). It combines the concept of IBD-based genome scan (Albrechtsen et al., 2010) , iHS (Voight, 2006) ,
and eigenanalysis of SNP data with an identity by descent interpretation (Zheng & Weir, 2016) . It can also be interpreted as spatial varying selection as ancestry genetic maps reflect geographic origins. Besides the detection of local adaptation, this package also estimates the population admixtures and plots its geographic genetic structure.
How to cite:
Xinghu Qin (2021). GenomeAdapt: Detecting Signatures of Local Adaptation Based on Ancestry
Trajectories. R package version 1.0.0, https://cran.r-project.org/web/packages/GenomeAdapt. Accessed 28 Mar. 2025.
Previous versions and publish date:
1.0.0 (2021-11-11 20:40)
Other packages that cited GenomeAdapt R package
View GenomeAdapt citation profile
Other R packages that GenomeAdapt depends,
imports, suggests or enhances
Functions, R codes and Examples using
the GenomeAdapt R package
Some associated functions: AdmixProp . GenomeAdapt . PlotAdmix . plotmanhattan . zscores_qvals .
Some associated R codes: Ancestry_prop.R . GenomeAdapt.R . zscores.R . Full GenomeAdapt package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
spinifex
Data visualization tours animates linear projection of multivariate data as its basis (ie. orientat ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Nicholas Spyrison (view profile)
FuzzyResampling
The classical (i.e. Efron's, see Efron and Tibshirani (1994, ISBN:978-0412042317) "An Introduction ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Maciej Romaniuk (view profile)
transfR
A geomorphology-based hydrological modelling for transferring streamflow measurements from gauged to ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Alban de Lavenne (view profile)
gripp
Set of functions designed to solve inverse problems. The direct problem is used to calculate a cost ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jader Lugon Junior (view profile)
hts
Provides methods for analysing and forecasting hierarchical and
grouped time series. The available ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Earo Wang (view profile)
23,842
R Packages
207,311
Dependencies
64,420
Author Associations
23,781
Publication Badges
