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restez  

Create and Query a Local Copy of 'GenBank' in R
View on CRAN: Click here


Download and install restez package within the R console
Install from CRAN:
install.packages("restez")

Install from Github:
library("remotes")
install_github("cran/restez")

Install by package version:
library("remotes")
install_version("restez", "2.1.4")



Attach the package and use:
library("restez")
Maintained by
Joel H. Nitta
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-11-26
Latest Update: 2023-10-25
Description:
Download large sections of 'GenBank' and generate a local SQL-based database. A user can then query this database using 'restez' functions or through 'rentrez' wrappers.
How to cite:
Joel H. Nitta (2018). restez: Create and Query a Local Copy of 'GenBank' in R. R package version 2.1.4, https://cran.r-project.org/web/packages/restez. Accessed 28 Jan. 2025.
Previous versions and publish date:
1.0.0 (2018-11-26 21:00), 2.1.2 (2022-09-05 17:20), 2.1.3 (2022-11-11 08:20)
Other packages that cited restez R package
View restez citation profile
Other R packages that restez depends, imports, suggests or enhances
Complete documentation for restez
Functions, R codes and Examples using the restez R package
Some associated functions: add_rcrd_log . cat_line . char . check_connection . cleanup . connected . connection_get . count_db_ids . db_create . db_delete . db_download . db_download_intern . db_sqlngths_get . db_sqlngths_log . demo_db_create . dir_size . dwnld_path_get . dwnld_rcrd_log . entrez_fasta_get . entrez_fetch . entrez_gb_get . extract_accession . extract_by_patterns . extract_clean_sequence . extract_definition . extract_features . extract_inforecpart . extract_keywords . extract_locus . extract_organism . extract_seqrecpart . extract_sequence . extract_version . file_download . filename_log . flatfile_read . gb_build . gb_definition_get . gb_df_create . gb_df_generate . gb_extract . gb_fasta_get . gb_organism_get . gb_record_get . gb_sequence_get . gb_sql_add . gb_sql_query . gb_version_get . gbrelease_check . gbrelease_get . gbrelease_log . has_data . identify_downloadable_files . is_in_db . last_add_get . last_dwnld_get . last_entry_get . latest_genbank_release . latest_genbank_release_notes . list_db_ids . message_missing . mock_def . mock_gb_df_generate . mock_org . mock_rec . mock_seq . ncbi_acc_get . predict_datasizes . print.status . readme_log . record . restez . restez_connect . restez_disconnect . restez_path_check . restez_path_get . restez_path_set . restez_path_unset . restez_ready . restez_rl . restez_status . search_gz . seshinfo_log . setup . slctn_get . slctn_log . sql_path_get . stat . status_class . testdatadir_get . 
Some associated R codes: biomartr-tools.R . connection-tools.R . db-get-tools.R . db-setup-tools.R . download-tools.R . entrez-tools.R . extract-tools.R . filepath-tools.R . gb-get-tools.R . gb-setup-tools.R . log-tools.R . mock-tools.R . print-tools.R . rentrez-wrappers.R . restez.R . status-tools.R . test-tools.R . wrappers.R .  Full restez package functions and examples
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