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pureseqtmr
View on CRAN: Click
here
Download and install pureseqtmr package within the R console
Install from CRAN:
install.packages("pureseqtmr")
Install from Github:
library("remotes")
install_github("cran/pureseqtmr")
Install by package version:
library("remotes")
install_version("pureseqtmr", "1.4")
Attach the package and use:
library("pureseqtmr")
Maintained by
Richèl J.C. Bilderbeek
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-30
Latest Update: 2023-04-06
Description:
Proteins reside in either the cell plasma or in the
cell membrane. A membrane protein goes through the
membrane at least once. Given the amino acid sequence of a
membrane protein, the tool
'PureseqTM' (,
as described in "Efficient And Accurate Prediction Of Transmembrane
Topology From Amino acid sequence only.", Wang, Qing, et al (2019),
),
can predict the topology of a membrane protein. This package
allows one to use 'PureseqTM' from R.
How to cite:
Richèl J.C. Bilderbeek (2020). pureseqtmr: Predict Transmembrane Protein Topology. R package version 1.4, https://cran.r-project.org/web/packages/pureseqtmr
Previous versions and publish date:
1.2 (2020-07-30 12:50)
Other packages that cited pureseqtmr R package
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Other R packages that pureseqtmr depends,
imports, suggests or enhances
Functions, R codes and Examples using
the pureseqtmr R package
Some associated functions: are_tmhs . are_valid_protein_sequences . calc_distance_to_tmh_center_from_topology . calc_distance_to_tmh_center_from_topology_str . calc_distance_to_tmh_center_from_topology_str_cpp_stl . check_protein_sequence . check_protein_sequences . check_pureseqtm_installation . check_topology . check_topology_str . convert_tmhmm_to_pureseqtm_topology . count_n_tmhs . create_pureseqtm_files . create_pureseqtm_proteome_file . default_params_doc . get_default_pureseqtm_folder . get_example_filename . get_example_filenames . get_pureseqtm_url . get_pureseqtm_version . install_pureseqtm . is_on_appveyor . is_on_ci . is_on_github_actions . is_on_travis . is_protein_name_line . is_pureseqtm_installed . is_tmh . is_topology_line . is_valid_protein_sequence . load_fasta_file_as_tibble . load_fasta_file_as_tibble_cpp . load_fasta_file_as_tibble_cpp_raw . load_fasta_file_as_tibble_r . load_topology_file_as_tibble . mock_predict_topologies_from_sequences . mock_predict_topology . parse_pureseqtm_proteome_text . plot_topology . predict_topologies_from_sequences . predict_topology . predict_topology_from_sequence . pureseqtmr . pureseqtmr_report . run_pureseqtm_proteome . save_tibble_as_fasta_file . tally_tmhs . uninstall_pureseqtm .
Some associated R codes: RcppExports.R . are_tmhs.R . are_valid_protein_sequences.R . calc_distance_to_tmh_center_from_topology.R . calc_distance_to_tmh_center_from_topology_str.R . check_protein_sequence.R . check_protein_sequences.R . check_pureseqtm_installation.R . check_topology.R . check_topology_str.R . convert_tmhmm_to_pureseqtm_topology.R . count_n_tmhs.R . create_pureseqtm_files.R . create_pureseqtm_proteome_file.R . default_params_doc.R . get_default_pureseqtm_folder.R . get_example_filename.R . get_example_filenames.R . get_pureseqtm_url.R . get_pureseqtm_version.R . install_pureseqtm.R . is_on_ci.R . is_protein_name_line.R . is_pureseqtm_installed.R . is_tmh.R . is_topology_line.R . is_valid_protein_sequence.R . load_fasta_file_as_tibble.R . load_fasta_file_as_tibble_cpp.R . load_fasta_file_as_tibble_r.R . load_topology_file_as_tibble.R . mock_predict_topologies_from_sequences.R . mock_predict_topology.R . parse_pureseqtm_proteome_text.R . plot_topology.R . predict_topologies_from_sequences.R . predict_topology.R . predict_topology_from_sequence.R . pureseqtmr.R . pureseqtmr_report.R . run_pureseqtm_proteome.R . save_tibble_as_fasta_file.R . tally_tmhs.R . uninstall_pureseqtm.R . use_rcpp.R . Full pureseqtmr package functions and examples
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