R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
polyRAD
View on CRAN: Click
here
Download and install polyRAD package within the R console
Install from CRAN:
install.packages("polyRAD")
Install from Github:
library("remotes")
install_github("cran/polyRAD") Install by package version:
library("remotes")
install_version("polyRAD", "2.0.0") Attach the package and use:
library("polyRAD")
Maintained by
Lindsay V. Clark
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-08-02
Latest Update: 2022-11-06
Description:
Read depth data from genotyping-by-sequencing (GBS) or restriction
site-associated DNA sequencing (RAD-seq) are imported and used to make Bayesian
probability estimates of genotypes in polyploids or diploids. The genotype
probabilities, posterior mean genotypes, or most probable genotypes can then
be exported for downstream analysis. 'polyRAD' is described by Clark et al.
(2019) , and the Hind/He statistic for marker
filtering is described by Clark et al. (2022) .
A variant calling pipeline for highly duplicated genomes is also included and
is described by Clark et al. (2020, Version 1) .
How to cite:
Lindsay V. Clark (2018). polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids. R package version 2.0.0, https://cran.r-project.org/web/packages/polyRAD. Accessed 28 Jun. 2026.
Previous versions and publish date:
Other packages that cited polyRAD R package
View polyRAD citation profile
Other R packages that polyRAD depends,
imports, suggests or enhances
Complete documentation for polyRAD
Functions, R codes and Examples using
the polyRAD R package
Some associated functions: AddAlleleFreqByTaxa . AddAlleleFreqHWE . AddAlleleFreqMapping . AddAlleleLinkages . AddGenotypeLikelihood . AddGenotypePosteriorProb . AddGenotypePriorProb_ByTaxa . AddGenotypePriorProb_Even . AddGenotypePriorProb_HWE . AddGenotypePriorProb_Mapping2Parents . AddPCA . AddPloidyChiSq . AddPloidyLikelihood . CanDoGetWeightedMeanGeno . EstimateContaminationRate . ExamineGenotype . ExpectedHindHe . ExportGAPIT . GetLikelyGen . GetTaxa . GetWeightedMeanGenotypes . HindHe . InbreedingFromHindHe . IterateHWE . LocusInfo . MakeTasselVcfFilter . MergeIdenticalHaplotypes . MergeRareHaplotypes . MergeTaxaDepth . OneAllelePerMarker . PipelineMapping2Parents . RADdata . RADdata2VCF . SetBlankTaxa . StripDown . SubsetByLocus . SubsetByPloidy . SubsetByTaxon . TestOverdispersion . VCF2RADdata . exampleRAD . readDArTag . readHMC . readProcessIsoloci . readProcessSamMulti . readStacks . readTASSELGBSv2 . readTagDigger . reverseComplement .
Some associated R codes: RcppExports.R . calculations.R . classes_methods.R . data_export.R . data_import.R . hindhe.R . overdispersion.R . pipelines.R . simulation.R . Full polyRAD package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
XKCDdata
Download data from individual XKCD comics, written by Randall Munroe < ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Robert Myles McDonnell (view profile)
minimax
The minimax family of distributions is a two-parameter
family like the beta family, but computation ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Bill Venables (view profile)
geoelectrics
Visualizes two-dimensional geoelectric resistivity measurement profiles in three dimensions. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Anja Kleebaum (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
arnie
Arnold Schwarzenegger movie weekend box office records from1982-2014 ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: 'Imanuel Costigan' (view profile)
nlraa
Additional nonlinear regression functions using self-start (SS) algorithms. One of the functions is ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Fernando Miguez (view profile)
27,653
R Packages
236,180
Dependencies
73,487
Author Associations
27,536
Publication Badges
