Other packages > Find by keyword >

phylter  

Detect and Remove Outliers in Phylogenomics Datasets
View on CRAN: Click here


Download and install phylter package within the R console
Install from CRAN:
install.packages("phylter")

Install from Github:
library("remotes")
install_github("cran/phylter")

Install by package version:
library("remotes")
install_version("phylter", "0.9.12")



Attach the package and use:
library("phylter")
Maintained by
Aurélie Siberchicot
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-01-20
Latest Update: 2025-07-29
Description:
Analyzis and filtering of phylogenomics datasets. It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify what species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) ), a generalization of classical multidimensional scaling to multiple distance matrices.
How to cite:
Aurélie Siberchicot (2023). phylter: Detect and Remove Outliers in Phylogenomics Datasets. R package version 0.9.12, https://cran.r-project.org/web/packages/phylter. Accessed 04 Jun. 2026.
Previous versions and publish date:
0.9.6 (2023-01-20 11:00), 0.9.7 (2023-02-27 11:12), 0.9.11 (2023-08-24 10:20)
Other packages that cited phylter R package
View phylter citation profile
Other R packages that phylter depends, imports, suggests or enhances
Complete documentation for phylter
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

golem  
A Framework for Robust Shiny Applications
An opinionated framework for building a production-ready 'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency  
murphydiagram  
Murphy Diagrams for Forecast Comparisons
Data and code for the paper by Ehm, Gneiting, Jordan and Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency  
phers  
Calculate Phenotype Risk Scores
Use phenotype risk scores based on linked clinical and genetic data to study Mendelian disease and ...
Download / Learn more Package Citations See dependency  
shinybusy  
Busy Indicators and Notifications for 'Shiny' Applications
Add indicators (spinner, progress bar, gif) in your 'shiny' applications to show the user that the ...
Download / Learn more Package Citations See dependency  
crplyr  
A 'dplyr' Interface for Crunch
In order to facilitate analysis of datasets hosted on the Crunch data platform ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA