Other packages > Find by keyword >

phylter  

Detect and Remove Outliers in Phylogenomics Datasets
View on CRAN: Click here


Download and install phylter package within the R console
Install from CRAN:
install.packages("phylter")

Install from Github:
library("remotes")
install_github("cran/phylter")

Install by package version:
library("remotes")
install_version("phylter", "0.9.12")



Attach the package and use:
library("phylter")
Maintained by
Aurélie Siberchicot
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-01-20
Latest Update: 2025-07-29
Description:
Analyzis and filtering of phylogenomics datasets. It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify what species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) ), a generalization of classical multidimensional scaling to multiple distance matrices.
How to cite:
Aurélie Siberchicot (2023). phylter: Detect and Remove Outliers in Phylogenomics Datasets. R package version 0.9.12, https://cran.r-project.org/web/packages/phylter. Accessed 15 Jul. 2026.
Previous versions and publish date:
(2026-07-09 06:41), 0.9.6 (2023-01-20 11:00), 0.9.7 (2023-02-27 11:12), 0.9.11 (2023-08-24 10:20)
Other packages that cited phylter R package
View phylter citation profile
Other R packages that phylter depends, imports, suggests or enhances
Complete documentation for phylter
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gscaLCA  
Generalized Structure Component Analysis- Latent Class Analysis & Latent Class Regression
Execute Latent Class Analysis (LCA) and Latent Class Regression (LCR) by using Generalized Structu ...
Download / Learn more Package Citations See dependency  
footBayes  
Fitting Bayesian and MLE Football Models
This is the first package allowing for the estimation, visualization and prediction of the most wel ...
Download / Learn more Package Citations See dependency  
PermAlgo  
Permutational Algorithm to Simulate Survival Data
This version of the permutational algorithm generates a dataset in which event and censoring times ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
SECFISH  
Disaggregate Variable Costs
These functions were developed within SECFISH project (Strengthening regional cooperation in the are ...
Download / Learn more Package Citations See dependency  
binhf  
Haar-Fisz Functions for Binomial Data
Binomial Haar-Fisz transforms for Gaussianization as in Nunes and Nason (2009). ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA