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phylter  

Detect and Remove Outliers in Phylogenomics Datasets
View on CRAN: Click here


Download and install phylter package within the R console
Install from CRAN:
install.packages("phylter")

Install from Github:
library("remotes")
install_github("cran/phylter")

Install by package version:
library("remotes")
install_version("phylter", "0.9.11")



Attach the package and use:
library("phylter")
Maintained by
Aurélie Siberchicot
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-01-20
Latest Update: 2023-08-24
Description:
Analyzis and filtering of phylogenomics datasets. It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify what species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) ), a generalization of classical multidimensional scaling to multiple distance matrices.
How to cite:
Aurélie Siberchicot (2023). phylter: Detect and Remove Outliers in Phylogenomics Datasets. R package version 0.9.11, https://cran.r-project.org/web/packages/phylter
Previous versions and publish date:
0.9.6 (2023-01-20 11:00), 0.9.7 (2023-02-27 11:12)
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