Other packages > Find by keyword >

phylter  

Detect and Remove Outliers in Phylogenomics Datasets
View on CRAN: Click here


Download and install phylter package within the R console
Install from CRAN:
install.packages("phylter")

Install from Github:
library("remotes")
install_github("cran/phylter")

Install by package version:
library("remotes")
install_version("phylter", "0.9.11")



Attach the package and use:
library("phylter")
Maintained by
Aurélie Siberchicot
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-01-20
Latest Update: 2023-08-24
Description:
Analyzis and filtering of phylogenomics datasets. It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify what species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) ), a generalization of classical multidimensional scaling to multiple distance matrices.
How to cite:
Aurélie Siberchicot (2023). phylter: Detect and Remove Outliers in Phylogenomics Datasets. R package version 0.9.11, https://cran.r-project.org/web/packages/phylter. Accessed 07 Nov. 2024.
Previous versions and publish date:
0.9.6 (2023-01-20 11:00), 0.9.7 (2023-02-27 11:12)
Other packages that cited phylter R package
View phylter citation profile
Other R packages that phylter depends, imports, suggests or enhances
Complete documentation for phylter
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

robregcc  
Robust Regression with Compositional Covariates
We implement the algorithm estimating the parameters of the robust regression model with composition ...
Download / Learn more Package Citations See dependency  
bacondecomp  
Goodman-Bacon Decomposition
Decomposition for differences-in-differences with variation in treatment timing from Goodman-Bacon ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
con2aqi  
Calculate the AQI from Pollutant Concentration
To calculate the AQI (Air Quality Index) from pollutant concentration data. O3, PM2.5, PM10, CO, SO ...
Download / Learn more Package Citations See dependency  

23,092

R Packages

198,677

Dependencies

62,675

Author Associations

23,089

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA