R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
phyclust
View on CRAN: Click
here
Download and install phyclust package within the R console
Install from CRAN:
install.packages("phyclust")
Install from Github:
library("remotes")
install_github("cran/phyclust")
Install by package version:
library("remotes")
install_version("phyclust", "0.1-34")
Attach the package and use:
library("phyclust")
Maintained by
Wei-Chen Chen
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.phyclust . https://github.com/snoweye/phyclust/issues . https://snoweye.github.io/phyclust/ . phyclust citation info . phyclust results . phyclust.pdf . phyclust-guide . phyclust_0.1-34.tar.gz . phyclust_0.1-34.zip . phyclust_0.1-34.zip . phyclust_0.1-34.zip . phyclust_0.1-34.tgz . phyclust_0.1-34.tgz . phyclust_0.1-34.tgz . phyclust_0.1-34.tgz . phyclust_0.1-34.tgz . phyclust_0.1-34.tgz . phyclust archive . https://CRAN.R-project.org/package=phyclust .
First Published: 2010-01-29
Latest Update: 2023-09-06
Description:
Phylogenetic clustering (phyloclustering) is an evolutionary
Continuous Time Markov Chain model-based approach to identify
population structure from molecular data without assuming
linkage equilibrium. The package phyclust (Chen 2011) provides a
convenient implementation of phyloclustering for DNA and SNP data,
capable of clustering individuals into subpopulations and identifying
molecular sequences representative of those subpopulations. It is
designed in C for performance, interfaced with R for visualization,
and incorporates other popular open source programs including
ms (Hudson 2002) ,
seq-gen (Rambaut and Grassly 1997)
,
Hap-Clustering (Tzeng 2005) and
PAML baseml (Yang 1997, 2007) ,
,
for simulating data, additional analyses, and searching the best tree.
See the phyclust website for more information, documentations and
examples.
How to cite:
Wei-Chen Chen (2010). phyclust: Phylogenetic Clustering (Phyloclustering). R package version 0.1-34, https://cran.r-project.org/web/packages/phyclust. Accessed 04 Apr. 2025.
Previous versions and publish date:
0.1-1 (2010-01-29 08:53), 0.1-2 (2010-02-18 17:53), 0.1-3 (2010-02-19 15:44), 0.1-4 (2010-02-21 19:43), 0.1-5 (2010-02-22 09:05), 0.1-6 (2010-04-10 08:33), 0.1-7 (2010-04-27 21:10), 0.1-8 (2010-09-19 20:30), 0.1-9 (2011-10-26 20:00), 0.1-10 (2011-11-06 09:39), 0.1-11 (2012-03-11 07:35), 0.1-12 (2012-06-06 08:05), 0.1-13 (2012-12-26 09:25), 0.1-14 (2013-01-08 19:18), 0.1-15 (2013-12-14 20:31), 0.1-16 (2015-12-04 08:40), 0.1-17 (2016-07-15 10:14), 0.1-18 (2016-12-11 12:26), 0.1-19 (2017-04-29 23:20), 0.1-20 (2017-08-26 15:27), 0.1-21 (2017-11-18 19:58), 0.1-22 (2017-12-02 20:22), 0.1-23 (2019-03-08 14:50), 0.1-24 (2019-03-27 11:00), 0.1-25 (2019-08-25 11:20), 0.1-26 (2019-09-27 06:30), 0.1-27 (2019-11-29 13:00), 0.1-28 (2019-12-08 11:30), 0.1-29 (2020-05-11 19:00), 0.1-30 (2021-02-10 15:00), 0.1-32 (2022-10-25 08:22), 0.1-33 (2023-01-22 22:40)
Other packages that cited phyclust R package
View phyclust citation profile
Other R packages that phyclust depends,
imports, suggests or enhances
Complete documentation for phyclust
Functions, R codes and Examples using
the phyclust R package
Some associated functions: 00_phyclust-package . 11_d.Color . 11_d.EMC . 11_d.EMControl . 11_d.boundary.method . 11_d.code.type . 11_d.edist.model . 11_d.em.method . 11_d.identifier . 11_d.init.method . 11_d.init.procedure . 11_d.label.method . 11_d.se.model . 11_d.show.option . 11_d.standard.code . 11_d.substitution . RRand . as.star.tree . bootstrap.seq.data . bootstrap.seq . bootstrap.star.trees . bootstrap.star.trees.seq . code2nid . code2snp . data.fasta.pony . data.phylip.crohn . data.phylip.pony . file.read . file.write . find.best . find.consensus . gen.equal.star.anc.dec . gen.seq . gen.star.tree . gen.unit.K . get.rooted.tree.height . getcut.fun . haplo.post.prob . ms . nid.aid.cid . paml.baseml . phyclust.Pt . phyclust.e.step . phyclust.edist . phyclust.em.step . phyclust.logL . phyclust.m.step . phyclust . phyclust.se . phyclust.se.update . phyclust.update . plotdots . plotgaps . plothist . plotnj . plotstruct . print.summary . prune.Mu . read.seqgen . rescale.rooted.tree . seq.data . seqgen . snp2sid . zz_all.internal . zz_all.internal.tzeng .
Some associated R codes: Full phyclust package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
metaprotr
Set of tools for descriptive analysis of metaproteomics data generated from high-throughput
mass ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Aaron Millan-Oropeza (view profile)
RMixpanel
Provides an interface to many endpoints of Mixpanel's Data Export, Engage and JQL API. The R functio ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Meinhard Ploner (view profile)
perryExamples
Examples for integrating package 'perry' for prediction error estimation into regression models. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Andreas Alfons (view profile)
PakPMICS2014HH
Provides data set and function for exploration of Multiple Indicator Cluster Survey (MICS) 2014 Hous ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Muhammad Yaseen (view profile)
Rexperigen
Provides convenience functions to communicate with
an Experigen server: Experigen ( ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Daniel Szeredi (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
23,990
R Packages
207,311
Dependencies
64,809
Author Associations
23,991
Publication Badges
