Other packages > Find by keyword >

phyclust  

Phylogenetic Clustering (Phyloclustering)
View on CRAN: Click here


Download and install phyclust package within the R console
Install from CRAN:
install.packages("phyclust")

Install from Github:
library("remotes")
install_github("cran/phyclust")

Install by package version:
library("remotes")
install_version("phyclust", "0.1-34")



Attach the package and use:
library("phyclust")
Maintained by
Wei-Chen Chen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2010-01-29
Latest Update: 2023-09-06
Description:
Phylogenetic clustering (phyloclustering) is an evolutionary Continuous Time Markov Chain model-based approach to identify population structure from molecular data without assuming linkage equilibrium. The package phyclust (Chen 2011) provides a convenient implementation of phyloclustering for DNA and SNP data, capable of clustering individuals into subpopulations and identifying molecular sequences representative of those subpopulations. It is designed in C for performance, interfaced with R for visualization, and incorporates other popular open source programs including ms (Hudson 2002) , seq-gen (Rambaut and Grassly 1997) , Hap-Clustering (Tzeng 2005) and PAML baseml (Yang 1997, 2007) , , for simulating data, additional analyses, and searching the best tree. See the phyclust website for more information, documentations and examples.
How to cite:
Wei-Chen Chen (2010). phyclust: Phylogenetic Clustering (Phyloclustering). R package version 0.1-34, https://cran.r-project.org/web/packages/phyclust. Accessed 26 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:41), 0.1-1 (2010-01-29 08:53), 0.1-2 (2010-02-18 17:53), 0.1-3 (2010-02-19 15:44), 0.1-4 (2010-02-21 19:43), 0.1-5 (2010-02-22 09:05), 0.1-6 (2010-04-10 08:33), 0.1-7 (2010-04-27 21:10), 0.1-8 (2010-09-19 20:30), 0.1-9 (2011-10-26 20:00), 0.1-10 (2011-11-06 09:39), 0.1-11 (2012-03-11 07:35), 0.1-12 (2012-06-06 08:05), 0.1-13 (2012-12-26 09:25), 0.1-14 (2013-01-08 19:18), 0.1-15 (2013-12-14 20:31), 0.1-16 (2015-12-04 08:40), 0.1-17 (2016-07-15 10:14), 0.1-18 (2016-12-11 12:26), 0.1-19 (2017-04-29 23:20), 0.1-20 (2017-08-26 15:27), 0.1-21 (2017-11-18 19:58), 0.1-22 (2017-12-02 20:22), 0.1-23 (2019-03-08 14:50), 0.1-24 (2019-03-27 11:00), 0.1-25 (2019-08-25 11:20), 0.1-26 (2019-09-27 06:30), 0.1-27 (2019-11-29 13:00), 0.1-28 (2019-12-08 11:30), 0.1-29 (2020-05-11 19:00), 0.1-30 (2021-02-10 15:00), 0.1-32 (2022-10-25 08:22), 0.1-33 (2023-01-22 22:40)
Other packages that cited phyclust R package
View phyclust citation profile
Other R packages that phyclust depends, imports, suggests or enhances
Complete documentation for phyclust
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

PCADSC  
Tools for Principal Component Analysis-Based Data Structure Comparisons
A suite of non-parametric, visual tools for assessing differences in data structures for two datase ...
Download / Learn more Package Citations See dependency  
SelvarMix  
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
Performs a regularization approach to variable selection in themodel-based clustering and classifica ...
Download / Learn more Package Citations See dependency  
RCytoGPS  
Using Cytogenetics Data in R
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then imp ...
Download / Learn more Package Citations See dependency  
clinUtils  
General Utility Functions for Analysis of Clinical Data
Utility functions to facilitate the import, the reporting and analysis of clinical data. Example ...
Download / Learn more Package Citations See dependency  
leafgl  
High-Performance 'WebGl' Rendering for Package 'leaflet'
Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript l ...
Download / Learn more Package Citations See dependency  
ncodeR  
Techniques for Automated Classifiers
A set of techniques that can be used to develop, validate, and implement automated classifiers. A po ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA