Other packages > Find by keyword >

omicwas  

Cell-Type-Specific Association Testing in Bulk Omics Experiments
View on CRAN: Click here


Download and install omicwas package within the R console
Install from CRAN:
install.packages("omicwas")

Install from Github:
library("remotes")
install_github("cran/omicwas")

Install by package version:
library("remotes")
install_version("omicwas", "0.8.0")



Attach the package and use:
library("omicwas")
Maintained by
Fumihiko Takeuchi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-02-19
Latest Update: 2020-10-08
Description:
In bulk epigenome/transcriptome experiments, molecular expression is measured in a tissue, which is a mixture of multiple types of cells. This package tests association of a disease/phenotype with a molecular marker for each cell type. The proportion of cell types in each sample needs to be given as input. The package is applicable to epigenome-wide association study (EWAS) and differential gene expression analysis. Takeuchi and Kato (submitted) "omicwas: cell-type-specific epigenome-wide and transcriptome association study".
How to cite:
Fumihiko Takeuchi (2020). omicwas: Cell-Type-Specific Association Testing in Bulk Omics Experiments. R package version 0.8.0, https://cran.r-project.org/web/packages/omicwas. Accessed 27 Oct. 2026.
Previous versions and publish date:
(2026-07-09 06:37), 0.3.1 (2020-02-19 10:42), 0.7.0 (2020-06-02 11:40)
Other packages that cited omicwas R package
View omicwas citation profile
Other R packages that omicwas depends, imports, suggests or enhances
Complete documentation for omicwas
Functions, R codes and Examples using the omicwas R package
Some associated functions: GSE42861small . GSE79262small . GTExsmall . ctassoc . ctcisQTL . rrs.fit . 
Some associated R codes: GSE42861small.R . GSE79262small.R . GTExsmall.R . ctcisQTL.R . lmridgeLW76.R . omicwas.R . rrs.R . supplement.estimators.R .  Full omicwas package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
SGB  
Simplicial Generalized Beta Regression
Main properties and regression procedures using a generalization of the Dirichlet distribution calle ...
Download / Learn more Package Citations See dependency  
exams2learnr  
Interface for 'exams' Exercises in 'learnr' Tutorials
Automatic generation of quizzes or individual questions for 'learnr' tutorials based on 'R/exams' ex ...
Download / Learn more Package Citations See dependency  
usemodels  
Boilerplate Code for 'Tidymodels' Analyses
Code snippets to fit models using the tidymodels framework can be easily created for a given data se ...
Download / Learn more Package Citations See dependency  
spanish  
Translate Quantities from Strings to Integer and Back. Misc Functions on Spanish Data
Character vector to numerical translation in Euros from Spanish spelled monetary quantities. Reverse ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA