Other packages > Find by keyword >

omicwas  

Cell-Type-Specific Association Testing in Bulk Omics Experiments
View on CRAN: Click here


Download and install omicwas package within the R console
Install from CRAN:
install.packages("omicwas")

Install from Github:
library("remotes")
install_github("cran/omicwas")

Install by package version:
library("remotes")
install_version("omicwas", "0.8.0")



Attach the package and use:
library("omicwas")
Maintained by
Fumihiko Takeuchi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-02-19
Latest Update: 2020-10-08
Description:
In bulk epigenome/transcriptome experiments, molecular expression is measured in a tissue, which is a mixture of multiple types of cells. This package tests association of a disease/phenotype with a molecular marker for each cell type. The proportion of cell types in each sample needs to be given as input. The package is applicable to epigenome-wide association study (EWAS) and differential gene expression analysis. Takeuchi and Kato (submitted) "omicwas: cell-type-specific epigenome-wide and transcriptome association study".
How to cite:
Fumihiko Takeuchi (2020). omicwas: Cell-Type-Specific Association Testing in Bulk Omics Experiments. R package version 0.8.0, https://cran.r-project.org/web/packages/omicwas. Accessed 06 Oct. 2026.
Previous versions and publish date:
(2026-07-09 06:37), 0.3.1 (2020-02-19 10:42), 0.7.0 (2020-06-02 11:40)
Other packages that cited omicwas R package
View omicwas citation profile
Other R packages that omicwas depends, imports, suggests or enhances
Complete documentation for omicwas
Functions, R codes and Examples using the omicwas R package
Some associated functions: GSE42861small . GSE79262small . GTExsmall . ctassoc . ctcisQTL . rrs.fit . 
Some associated R codes: GSE42861small.R . GSE79262small.R . GTExsmall.R . ctcisQTL.R . lmridgeLW76.R . omicwas.R . rrs.R . supplement.estimators.R .  Full omicwas package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gRim  
Graphical Interaction Models
Provides the following types of models: Models for contingency tables (i.e. log-linear models) Grap ...
Download / Learn more Package Citations See dependency  
gecko  
Geographical Ecology and Conservation Knowledge Online
Includes a collection of geographical analysis functions aimed primarily at ecology and conservation ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA