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netmhc2pan  

Interface to 'NetMHCIIpan'
View on CRAN: Click here


Download and install netmhc2pan package within the R console
Install from CRAN:
install.packages("netmhc2pan")

Install from Github:
library("remotes")
install_github("cran/netmhc2pan")

Install by package version:
library("remotes")
install_version("netmhc2pan", "1.3.2")



Attach the package and use:
library("netmhc2pan")
Maintained by
Richèl J.C. Bilderbeek
[Scholar Profile | Author Map]
First Published: 2020-11-18
Latest Update: 2020-11-18
Description:
The field of immunology benefits from software that can predict which peptide sequences trigger an immune response. 'NetMHCIIpan' is a such a tool: it predicts the binding strength of a short peptide to a Major Histocompatibility Complex class II (MHC-II) molecule. 'NetMHCIIpan' can be used from a web server at or from the command-line, using a local installation. This package allows to call 'NetMHCIIpan' from R.
How to cite:
Richèl J.C. Bilderbeek (2020). netmhc2pan: Interface to 'NetMHCIIpan'. R package version 1.3.2, https://cran.r-project.org/web/packages/netmhc2pan. Accessed 05 May. 2025.
Previous versions and publish date:
1.3.1 (2020-11-18 10:40)
Other packages that cited netmhc2pan R package
View netmhc2pan citation profile
Other R packages that netmhc2pan depends, imports, suggests or enhances
Complete documentation for netmhc2pan
Functions, R codes and Examples using the netmhc2pan R package
Some associated functions: capitalize_first_char . check_alleles . check_can_create_file . check_fasta_file_sequence_lengths . check_netmhc2pan_bin_url . check_netmhc2pan_data_url . check_netmhc2pan_installation . create_temp_fasta_filename . create_temp_xls_filename . default_params_doc . download_netmhc2pan_bin . get_default_netmhc2pan_bin_path . get_default_netmhc2pan_bin_tarfile_path . get_default_netmhc2pan_folder . get_default_netmhc2pan_subfolder . get_default_netmhc2pan_version . get_netmhc2pan_alleles . get_netmhc2pan_archive_filename . get_netmhc2pan_bin_url . get_netmhc2pan_data_url . get_netmhc2pan_url . install_netmhc2pan . install_netmhc2pan_bin . install_netmhc2pan_bin_from_file . install_netmhc2pan_data . install_netmhc2pan_data_from_file . install_netmhc2pan_from_files . is_netmhc2pan_bin_installed . is_netmhc2pan_data_installed . is_netmhc2pan_haplotype . is_netmhc2pan_installed . is_netmhc2pan_set_up . is_on_appveyor . is_on_ci . is_on_github_actions . is_on_travis . is_tcsh_installed . is_url_valid . netmhc2pan . netmhc2pan_report . netmhc2pan_self_test . predict_ic50 . predict_ic50s . read_netmhc2pan_xls_output . run_netmhc2pan . set_up_netmhc2pan . to_netmhc2pan_name . uninstall_netmhc2pan . 
Some associated R codes: capitalize_first_char.R . check_alleles.R . check_can_create_file.R . check_fasta_file_sequence_lengths.R . check_netmhc2pan_bin_url.R . check_netmhc2pan_data_url.R . check_netmhc2pan_installation.R . create_temp_fasta_filename.R . create_temp_xls_filename.R . default_params_doc.R . download_netmhc2pan_bin.R . get_default_netmhc2pan_bin_path.R . get_default_netmhc2pan_bin_tarfile_path.R . get_default_netmhc2pan_folder.R . get_default_netmhc2pan_subfolder.R . get_default_netmhc2pan_version.R . get_netmhc2pan_alleles.R . get_netmhc2pan_archive_filename.R . get_netmhc2pan_bin_url.R . get_netmhc2pan_data_url.R . get_netmhc2pan_url.R . install_netmhc2pan.R . install_netmhc2pan_bin.R . install_netmhc2pan_bin_from_file.R . install_netmhc2pan_data.R . install_netmhc2pan_data_from_file.R . install_netmhc2pan_from_files.R . is_netmhc2pan_haplotype.R . is_netmhc2pan_installed.R . is_on_ci.R . is_url_valid.R . netmhc2pan.R . netmhc2pan_report.R . netmhc2pan_self_test.R . predict_ic50.R . predict_ic50s.R . read_netmhc2pan_xls_output.R . run_netmhc2pan.R . set_up_netmhc2pan.R . to_netmhc2pan_name.R . uninstall_netmhc2pan.R .  Full netmhc2pan package functions and examples
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