R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
mutSignatures
View on CRAN: Click
here
Download and install mutSignatures package within the R console
Install from CRAN:
install.packages("mutSignatures")
Install from Github:
library("remotes")
install_github("cran/mutSignatures") Install by package version:
library("remotes")
install_version("mutSignatures", "2.1.1") Attach the package and use:
library("mutSignatures")
Maintained by
Damiano Fantini
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-01-24
Latest Update: 2020-11-09
Description:
Cancer cells accumulate DNA mutations as result of DNA damage and DNA repair processes. This computational framework is aimed at deciphering DNA mutational signatures operating in cancer. The framework includes modules that support raw data import and processing, mutational signature extraction, and results interpretation and visualization. The framework accepts widely used file formats storing information about DNA variants, such as Variant Call Format files. The framework performs Non-Negative Matrix Factorization to extract mutational signatures explaining the observed set of DNA mutations. Bootstrapping is performed as part of the analysis. The framework supports parallelization and is optimized for use on multi-core systems. The software was described by Fantini D et al (2020) and is based on a custom R-based implementation of the original MATLAB WTSI framework by Alexandrov LB et al (2013) .
How to cite:
Damiano Fantini (2017). mutSignatures: Decipher Mutational Signatures from Somatic Mutational Catalogs. R package version 2.1.1, https://cran.r-project.org/web/packages/mutSignatures. Accessed 12 Aug. 2026.
Previous versions and publish date:
Other packages that cited mutSignatures R package
View mutSignatures citation profile
Other R packages that mutSignatures depends,
imports, suggests or enhances
Complete documentation for mutSignatures
Functions, R codes and Examples using
the mutSignatures R package
Some associated functions: addWeak . alexaNMF . as.data.frame-mutSignExposures-method . as.data.frame-mutationCounts-method . as.data.frame-mutationSignatures-method . as.list-mutFrameworkParams-method . as.list-mutationSignatures-method . as.matrix-mutationCounts-method . as.mutation.counts . as.mutation.signatures . as.mutsign.exposures . attachContext . attachMutType . bootstrapCancerGenomes . cbind2 . chihJenNMF . coerceObj-methods . countMutTypes . custom_cssls . custom_fcnnls . decipherMutationalProcesses . deconvoluteMutCounts . evaluateStability . extractSignatures . extractXvarlinkData . filterOutIterations . filterSNV . frequencize . getCosmicSignatures . getCounts . getFwkParam . getMutationTypes . getSampleIdentifiers . getSignatureIdentifiers . getTestRunArgs . importVCFfiles . leadZeros . matchSignatures . msigPlot . mutFrameworkParams-class . mutFrameworkParams-show . mutSigData . mutSignExposures-class . mutSignExposures-show . mutSignatures-package . mutationCounts-class . mutationCounts-show . mutationSignatures-class . mutationSignatures-show . plotMutTypeProfile . plotSignExposures . prelimProcessAssess . processVCFdata . removeMismatchMut . removeWeak . resolveMutSignatures . revCompl . setFwkParam . setMutClusterParams . silhouetteMLB . simplifySignatures . sortByMutations . sub-mutSignExposures-numeric-ANY-ANY-method . sub-mutationCounts-numeric-ANY-ANY-method . sub-mutationSignatures-numeric-ANY-ANY-method . table2df .
Some associated R codes: s01_all_classes.R . s02_all_methods.R . s03_all_functions.R . s04_all_extra.R . Full mutSignatures package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
flexdashboard
Format for converting an R Markdown document to a grid
oriented dashboard. The dashboard flexibly a ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Garrick Aden-Buie (view profile)
ipdw
Functions are provided to interpolate geo-referenced point data via
Inverse Path Distance Weighting ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jemma Stachelek (view profile)
spatstat.random
Functionality for random generation of spatial data in the 'spatstat' family of packages. Generate ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Adrian Baddeley (view profile)
matrixsampling
Provides samplers for various matrix variate distributions: Wishart, inverse-Wishart, normal, t, inv ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Stéphane Laurent (view profile)
keyplayer
Computes group centrality scores and identifies the most central group of players in a network. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Weihua An (view profile)
quickcheck
Property based testing, inspired by
the original 'QuickCheck'. This package builds on
the property ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Andrew McNeil (view profile)
28,313
R Packages
239,283
Dependencies
74,752
Author Associations
28,314
Publication Badges
