Other packages > Find by keyword >

miniLNM  

Miniature Logistic-Normal Multinomial Models
View on CRAN: Click here


Download and install miniLNM package within the R console
Install from CRAN:
install.packages("miniLNM")

Install from Github:
library("remotes")
install_github("cran/miniLNM")

Install by package version:
library("remotes")
install_version("miniLNM", "0.1.0")



Attach the package and use:
library("miniLNM")
Maintained by
Kris Sankaran
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-13
Latest Update: 2024-09-13
Description:
Logistic-normal Multinomial (LNM) models are common in problems with multivariate count data. This package gives a simple implementation with a 30 line 'Stan' script. This lightweight implementation makes it an easy starting point for other projects, in particular for downstream tasks that require analysis of "compositional" data. It can be applied whenever a multinomial probability parameter is thought to depend linearly on inputs in a transformed, log ratio space. Additional utilities make it easy to inspect, create predictions, and draw samples using the fitted models. More about the LNM can be found in Xia et al. (2013) "A Logistic Normal Multinomial Regression Model for Microbiome Compositional Data Analysis" <doi:10.1111/biom.12079> and Sankaran and Holmes (2023) "Generative Models: An Interdisciplinary Perspective" <doi:10.1146/annurev-statistics-033121-110134>.
How to cite:
Kris Sankaran (2024). miniLNM: Miniature Logistic-Normal Multinomial Models. R package version 0.1.0, https://cran.r-project.org/web/packages/miniLNM. Accessed 21 Nov. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited miniLNM R package
View miniLNM citation profile
Other R packages that miniLNM depends, imports, suggests or enhances
Complete documentation for miniLNM
Functions, R codes and Examples using the miniLNM R package
Full miniLNM package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
kgschart  
KGS Rank Graph Parser
Restore underlining numeric data from rating history graph of KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency  
RcppHNSW  
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R int ...
Download / Learn more Package Citations See dependency  
pkgdepends  
Package Dependency Resolution and Downloads
Find recursive dependencies of 'R' packages from various sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency  
deductive  
Data Correction and Imputation Using Deductive Methods
Attempt to repair inconsistencies and missing values in data records by using information from vali ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA