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maldipickr
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Download and install maldipickr package within the R console
Install from CRAN:
install.packages("maldipickr")
Install from Github:
library("remotes")
install_github("cran/maldipickr")
Install by package version:
library("remotes")
install_version("maldipickr", "1.3.1")
Attach the package and use:
library("maldipickr")
Maintained by
Charlie Pauvert
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-09-07
Latest Update: 2023-12-14
Description:
Convenient wrapper functions for the analysis of
matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF)
spectra data in order to select only representative spectra (also
called cherry-pick). The package covers the preprocessing and
dereplication steps (based on Strejcek, Smrhova, Junkova and Uhlik
(2018) ) needed to cluster MALDI-TOF
spectra before the final cherry-picking step. It enables the easy
exclusion of spectra and/or clusters to accommodate complex
cherry-picking strategies. Alternatively, cherry-picking using
taxonomic identification MALDI-TOF data is made easy with functions to
import inconsistently formatted reports.
How to cite:
Charlie Pauvert (2023). maldipickr: Dereplicate and Cherry-Pick Mass Spectrometry Spectra. R package version 1.3.1, https://cran.r-project.org/web/packages/maldipickr. Accessed 27 Jan. 2025.
Previous versions and publish date:
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Other R packages that maldipickr depends,
imports, suggests or enhances
Complete documentation for maldipickr
Functions, R codes and Examples using
the maldipickr R package
Some associated functions: check_spectra . delineate_with_identification . delineate_with_similarity . get_spectra_names . import_biotyper_spectra . import_spede_clusters . is_well_on_edge . maldipickr-package . merge_processed_spectra . pick_spectra . pipe . process_spectra . read_biotyper_report . read_many_biotyper_reports . remove_spectra . set_reference_spectra .
Some associated R codes: check_spectra.R . delineate_with_identification.R . delineate_with_similarity.R . get_spectra_names.R . import_biotyper_spectra.R . import_spede_clusters.R . is_a_processed_spectra_list.R . is_a_rds_list.R . is_well_on_edge.R . maldipickr-package.R . merge_processed_spectra.R . pick_spectra.R . process_spectra.R . read_biotyper_report.R . read_many_biotyper_reports.R . remove_spectra.R . remove_spectra_logical.R . set_reference_spectra.R . utils-pipe.R . Full maldipickr package functions and examples
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