Other packages > Find by keyword >

maldipickr  

Dereplicate and Cherry-Pick Mass Spectrometry Spectra
View on CRAN: Click here


Download and install maldipickr package within the R console
Install from CRAN:
install.packages("maldipickr")

Install from Github:
library("remotes")
install_github("cran/maldipickr")

Install by package version:
library("remotes")
install_version("maldipickr", "1.3.1")



Attach the package and use:
library("maldipickr")
Maintained by
Charlie Pauvert
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-09-07
Latest Update: 2023-12-14
Description:
Convenient wrapper functions for the analysis of matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) spectra data in order to select only representative spectra (also called cherry-pick). The package covers the preprocessing and dereplication steps (based on Strejcek, Smrhova, Junkova and Uhlik (2018) ) needed to cluster MALDI-TOF spectra before the final cherry-picking step. It enables the easy exclusion of spectra and/or clusters to accommodate complex cherry-picking strategies. Alternatively, cherry-picking using taxonomic identification MALDI-TOF data is made easy with functions to import inconsistently formatted reports.
How to cite:
Charlie Pauvert (2023). maldipickr: Dereplicate and Cherry-Pick Mass Spectrometry Spectra. R package version 1.3.1, https://cran.r-project.org/web/packages/maldipickr. Accessed 27 Jan. 2025.
Previous versions and publish date:
1.1.1 (2023-09-07 20:10), 1.2.0 (2023-10-25 14:30), 1.3.0 (2023-12-14 13:30)
Other packages that cited maldipickr R package
View maldipickr citation profile
Other R packages that maldipickr depends, imports, suggests or enhances
Complete documentation for maldipickr
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

shinybrms  
Graphical User Interface ('shiny' App) for 'brms'
A graphical user interface (GUI) for fitting Bayesian regression models using the package 'brms' wh ...
Download / Learn more Package Citations See dependency  
intccr  
Semiparametric Competing Risks Regression under Interval Censoring
Semiparametric regression models on the cumulative incidence function for interval-censored competin ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
AssetCorr  
Estimating Asset Correlations from Default Data
Functions for the estimation of intra- and inter-cohort correlations in the Vasicek credit portfolio ...
Download / Learn more Package Citations See dependency  
mgm  
Estimating Time-Varying k-Order Mixed Graphical Models
Estimation of k-Order time-varying Mixed Graphical Models and mixed VAR(p) models via elastic-net re ...
Download / Learn more Package Citations See dependency  

23,580

R Packages

204,057

Dependencies

63,980

Author Associations

23,561

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA