Other packages > Find by keyword >

lori  

Imputation of High-Dimensional Count Data using Side Information
View on CRAN: Click here


Download and install lori package within the R console
Install from CRAN:
install.packages("lori")

Install from Github:
library("remotes")
install_github("cran/lori")

Install by package version:
library("remotes")
install_version("lori", "2.2.3")



Attach the package and use:
library("lori")
Maintained by
Genevieve Robin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-02-27
Latest Update: 2020-12-16
Description:
Analysis, imputation, and multiple imputation of count data using covariates. LORI uses a log-linear Poisson model where main row and column effects, as well as effects of known covariates and interaction terms can be fitted. The estimation procedure is based on the convex optimization of the Poisson loss penalized by a Lasso type penalty and a nuclear norm. LORI returns estimates of main effects, covariate effects and interactions, as well as an imputed count table. The package also contains a multiple imputation procedure. The methods are described in Robin, Josse, Moulines and Sardy (2019) .
How to cite:
Genevieve Robin (2018). lori: Imputation of High-Dimensional Count Data using Side Information. R package version 2.2.3, https://cran.r-project.org/web/packages/lori. Accessed 30 Jan. 2025.
Previous versions and publish date:
0.1.0 (2018-02-27 11:31), 0.2.0 (2018-09-12 13:40), 0.2.1 (2018-10-05 09:20), 1.0.0 (2018-11-16 12:20), 2.0.0 (2019-02-19 15:20), 2.1.1 (2019-02-26 16:40), 2.1.2 (2019-03-07 07:20), 2.1.3 (2019-03-29 10:10), 2.2.0 (2019-12-10 23:40), 2.2.1 (2020-11-26 14:10), 2.2.2 (2020-12-16 15:00)
Other packages that cited lori R package
View lori citation profile
Other R packages that lori depends, imports, suggests or enhances
Complete documentation for lori
Functions, R codes and Examples using the lori R package
Some associated functions: aravo . covmat . cv.lori . lori . mi.lori . pool.lori . qut . 
Some associated R codes: altmin.R . aravo.R . covmat.R . cv.lori.R . grad.R . lori.R . mcgd.R . mi.lori.R . pool.lori.R . qut.R .  Full lori package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

convertid  
Convert Gene IDs Between Each Other and Fetch Annotations from Biomart
Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in conve ...
Download / Learn more Package Citations See dependency  
fastmit  
Fast Mutual Information Based Independence Test
A mutual information estimator based on k-nearest neighbor method proposed by A. Kraskov, et al. (20 ...
Download / Learn more Package Citations See dependency  
GGMncv  
Gaussian Graphical Models with Nonconvex Regularization
Estimate Gaussian graphical models with nonconvex penalties , including ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
WtTopsis  
Weighted Method for Multiple-Criteria Decision Making
Evaluation of alternatives based on multiple criteria using weighted technique for Order preference ...
Download / Learn more Package Citations See dependency  
cinaR  
A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combi ...
Download / Learn more Package Citations See dependency  

23,580

R Packages

204,057

Dependencies

63,980

Author Associations

23,581

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA