Other packages > Find by keyword >

lfproQC  

Quality Control for Label-Free Proteomics Expression Data
View on CRAN: Click here


Download and install lfproQC package within the R console
Install from CRAN:
install.packages("lfproQC")

Install from Github:
library("remotes")
install_github("cran/lfproQC")

Install by package version:
library("remotes")
install_version("lfproQC", "1.4.0")



Attach the package and use:
library("lfproQC")
Maintained by
Kabilan S
[Scholar Profile | Author Map]
First Published: 2024-05-23
Latest Update: 2024-05-23
Description:
Label-free bottom-up proteomics expression data is often affected by data heterogeneity and missing values. Normalization and missing value imputation are commonly used techniques to address these issues and make the dataset suitable for further downstream analysis. This package provides an optimal combination of normalization and imputation methods for the dataset. The package utilizes three normalization methods and three imputation methods.The statistical evaluation measures named pooled co-efficient of variance, pooled estimate of variance and pooled median absolute deviation are used for selecting the best combination of normalization and imputation method for the given dataset. The user can also visualize the results by using various plots available in this package. The user can also perform the differential expressionanalysis between two sample groups with the function included in this package. The chosen three normalization methods, three imputation methods and three evaluation measures were chosen for this study based on the research papers published by Välikangas et al. (2016) <doi:10.1093/bib/bbw095>, Jin et al. (2021) <doi:10.1038/s41598-021-81279-4> and Srivastava et al. (2023) <doi:10.2174/1574893618666230223150253>.
How to cite:
Kabilan S (2024). lfproQC: Quality Control for Label-Free Proteomics Expression Data. R package version 1.4.0, https://cran.r-project.org/web/packages/lfproQC. Accessed 17 Feb. 2025.
Previous versions and publish date:
0.1.0 (2024-05-23 18:10), 0.2.0 (2024-09-06 15:00), 0.3.0 (2024-09-13 11:50), 1.3.0 (2024-09-30 09:20)
Other packages that cited lfproQC R package
View lfproQC citation profile
Other R packages that lfproQC depends, imports, suggests or enhances
Complete documentation for lfproQC
Functions, R codes and Examples using the lfproQC R package
Full lfproQC package functions and examples
Downloads during the last 30 days
01/1801/1901/2001/2101/2201/2301/2401/2501/2601/2701/2801/2901/3001/3102/0102/0202/0302/0402/0502/0602/0702/0802/0902/1002/1102/1202/1302/1402/1502/16Downloads for lfproQC024681012141618202224TrendBars
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

vrtest  
Variance Ratio Tests and Other Tests for Martingale Difference Hypothesis
Acollection of statistical tests for martingale difference hypothesis, including automatic portmante ...
Download / Learn more Package Citations See dependency  
RecordTest  
Inference Tools in Time Series Based on Record Statistics
Statistical tools based on the probabilistic properties of the record occurrence in a sequence of i ...
Download / Learn more Package Citations See dependency  
mcmcse  
Monte Carlo Standard Errors for MCMC
Provides tools for computing Monte Carlo standard errors (MCSE) in Markov chain Monte Carlo (MCMC) ...
Download / Learn more Package Citations See dependency  
officedown  
Enhanced 'R Markdown' Format for 'Word' and 'PowerPoint'
Allows production of 'Microsoft' corporate documents from 'R Markdown' by reusing formatting define ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

23,712

R Packages

205,795

Dependencies

64,332

Author Associations

23,631

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA