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gwasrapidd  

'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog
View on CRAN: Click here


Download and install gwasrapidd package within the R console
Install from CRAN:
install.packages("gwasrapidd")

Install from Github:
library("remotes")
install_github("cran/gwasrapidd")

Install by package version:
library("remotes")
install_version("gwasrapidd", "0.99.17")



Attach the package and use:
library("gwasrapidd")
Maintained by
Ramiro Magno
[Scholar Profile | Author Map]
First Published: 2021-11-23
Latest Update: 2023-12-15
Description:
'GWAS' R 'API' Data Download. This package provides easy access to the 'NHGRI'-'EBI' 'GWAS' Catalog data by accessing the 'REST' 'API' .
How to cite:
Ramiro Magno (2021). gwasrapidd: 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog. R package version 0.99.17, https://cran.r-project.org/web/packages/gwasrapidd. Accessed 08 May. 2025.
Previous versions and publish date:
0.99.11 (2021-11-23 09:30), 0.99.12 (2021-11-29 12:50), 0.99.13 (2022-08-12 00:20), 0.99.14 (2022-12-23 15:30)
Other packages that cited gwasrapidd R package
View gwasrapidd citation profile
Other R packages that gwasrapidd depends, imports, suggests or enhances
Complete documentation for gwasrapidd
Functions, R codes and Examples using the gwasrapidd R package
Some associated functions: add_object_tier . allele_name . ancestral_groups_tbl . ancestries_tbl . association_to_study . association_to_trait . association_to_variant . associations-class . associations . associations_drop_na . associations_tbl . bind . child_efo_ids . contains_question_mark . countries_tbl . cytogenetic_band_to_genomic_range . cytogenetic_bands . empty_to_na . ensembl_ids_tbl . entrez_ids_tbl . equal_length . exists_variant . extract_association_id . filter_by_id . filter_variants_by_standard_chromosomes . gc_examples . gc_get . gc_request . gc_request_all . genomic_contexts_tbl . genotyping_techs_tbl . get_associations . get_associations_all . get_associations_by_association_id . get_associations_by_efo_id . get_associations_by_efo_trait . get_associations_by_pubmed_id . get_associations_by_study_id . get_associations_by_variant_id . get_child_efo . get_metadata . get_studies . get_studies_all . get_studies_by_association_id . get_studies_by_efo_id . get_studies_by_efo_trait . get_studies_by_efo_uri . get_studies_by_full_pvalue_set . get_studies_by_pubmed_id . get_studies_by_reported_trait . get_studies_by_study_id . get_studies_by_user_requested . get_studies_by_variant_id . get_traits . get_traits_all . get_traits_by_association_id . get_traits_by_efo_id . get_traits_by_efo_trait . get_traits_by_efo_uri . get_traits_by_pubmed_id . get_traits_by_study_id . get_variants . get_variants_all . get_variants_by_association_id . get_variants_by_cytogenetic_band . get_variants_by_efo_id . get_variants_by_efo_trait . get_variants_by_gene_name . get_variants_by_genomic_range . get_variants_by_pubmed_id . get_variants_by_reported_trait . get_variants_by_study_id . get_variants_by_variant_id . gwasrapidd-package . is_association_id . is_ebi_reachable . is_efo_id . is_efo_id2 . is_embedded . is_empty_str . is_human_chromosome . is_paginated . is_pubmed_id . is_rs_id . is_study_id . list_to_s4 . loci_tbl . lstjoin . metadata_lst . missing_to_na . n . normalise_obj . object_type_from_url . open_in_dbsnp . open_in_gtex . open_in_gwas_catalog . open_in_pubmed . peel_off_embedded . pipe . platforms_tbl . publications_tbl . recursive_apply . reported_genes_tbl . risk_alleles_tbl . s4_to_list . set_testing_fast . set_testing_slow . setop . skip_if_testing_is_fast . studies-class . studies . studies_drop_na . studies_tbl . study_to_association . study_to_trait . study_to_variant . subset-associations . subset-studies . subset-traits . subset-variants . sure . trait_to_association . trait_to_study . trait_to_variant . traits-class . traits . traits_drop_na . traits_tbl . tws . v_ensembl_ids_tbl . v_entrez_ids_tbl . variant_name . variant_to_association . variant_to_study . variant_to_trait . variants-class . variants . variants_drop_na . variants_tbl . write_xlsx . 
Some associated R codes: browser.R . class-associations.R . class-studies.R . class-traits.R . class-variants.R . data.R . ebi_server.R . generics.R . get_associations.R . get_metadata.R . get_studies.R . get_traits.R . get_variants.R . gwasrapidd-package.R . id_mapping.R . list_joins.R . missing.R . parse-associations.R . parse-studies.R . parse-traits.R . parse-utils.R . parse-variants.R . post-studies.R . post-traits.R . post-variants.R . recursive_apply.R . request.R . s4-utils.R . sure.R . tests.R . utils-pipe.R . utils.R . write_xlsx.R .  Full gwasrapidd package functions and examples
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