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graph4lg
View on CRAN: Click
here
Download and install graph4lg package within the R console
Install from CRAN:
install.packages("graph4lg")
Install from Github:
library("remotes")
install_github("cran/graph4lg") Install by package version:
library("remotes")
install_version("graph4lg", "1.8.0") Attach the package and use:
library("graph4lg")
Maintained by
Paul Savary
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-07-23
Latest Update: 2023-01-30
Description:
Build graphs for landscape genetics analysis. This set of
functions can be used to import and convert spatial and genetic data
initially in different formats, import landscape graphs created with
'GRAPHAB' software (Foltete et al., 2012) ,
make diagnosis plots of isolation by distance relationships in order to
choose how to build genetic graphs, create graphs with a large range of
pruning methods, weight their links with several genetic distances, plot
and analyse graphs, compare them with other graphs. It uses functions from
other packages such as 'adegenet'
(Jombart, 2008) and 'igraph' (Csardi
et Nepusz, 2006) . It also implements methods
commonly used in landscape genetics to create graphs, described by Dyer et
Nason (2004) and Greenbaum et
Fefferman (2017) , and to analyse distance data
(van Strien et al., 2015) .
How to cite:
Paul Savary (2019). graph4lg: Build Graphs for Landscape Genetics Analysis. R package version 1.8.0, https://cran.r-project.org/web/packages/graph4lg. Accessed 05 Jun. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for graph4lg
Functions, R codes and Examples using
the graph4lg R package
Some associated functions: add_nodes_attr . check_merge . compar_r_fisher . compute_graph_modul . compute_node_metric . convert_cd . data_ex_genind . data_ex_gstud . data_ex_loci . data_simul_genind . data_tuto . deg2rad . df_to_pw_mat . dist_gc_hvs . dist_gc_slc . dist_gc_vicenty . dist_great_circle . dist_max_corr . g_percol . gen_graph_indep . gen_graph_thr . gen_graph_topo . genepop_to_genind . genind_to_genepop . genind_to_structure . get_graphab . get_graphab_linkset . get_graphab_linkset_cost . get_graphab_metric . get_graphab_raster_codes . gini_coeff . graph_modul_compar . graph_node_compar . graph_plan . graph_plot_compar . graph_to_df . graph_to_shp . graph_topo_compar . graphab_capacity . graphab_corridor . graphab_graph . graphab_interpol . graphab_link . graphab_metric . graphab_modul . graphab_pointset . graphab_project . graphab_project_desc . graphab_to_igraph . gstud_to_genind . harm_mean . kernel_param . link_compar . loci_to_genind . mat_cost_dist . mat_gen_dist . mat_geo_dist . mat_pw_dps . mat_pw_fst . mypalette . patch_areas . plot_graph_lg . plot_w_hist . pop_gen_index . pop_rare_gen_index . pts_pop_ex . pts_pop_simul . pw_mat_to_df . reorder_mat . sample_raster . sc01 . scatter_dist . scatter_dist_g . structure_to_genind .
Some associated R codes: add_nodes_attr.R . aux_25_09.R . check_merge.R . compar_r_fisher.R . compute_graph_modul.R . compute_node_metric.R . convert_cd.R . data.R . df_to_pw_mat.R . dist_great_circle.R . dist_max_corr.R . g_percol.R . gen_graph_indep.R . gen_graph_thr.R . gen_graph_topo.R . genepop_to_genind.R . genind_to_genepop.R . genind_to_structure.R . get_graphab.R . get_graphab_linkset.R . get_graphab_linkset_cost.R . get_graphab_metric.R . get_graphab_raster_codes.R . graph_modul_compar.R . graph_node_compar.R . graph_plan.R . graph_plot_compar.R . graph_to_df.R . graph_to_shp.R . graph_topo_compar.R . graphab_capacity.R . graphab_corridor.R . graphab_graph.R . graphab_interpol.R . graphab_link.R . graphab_metric.R . graphab_modul.R . graphab_pointset.R . graphab_project.R . graphab_project_desc.R . graphab_to_igraph.R . gstud_to_genind.R . internal_functions.R . kernel_param.R . link_compar.R . loci_to_genind.R . mat_cost_dist.R . mat_gen_dist.R . mat_geo_dist.R . mat_pw_dps.R . mat_pw_fst.R . other_objects.R . plot_graph_lg.R . plot_w_hist.R . pop_gen_index.R . pop_rare_gen_index.R . pw_mat_to_df.R . reorder_mat.R . sample_raster.R . scatter_dist.R . scatter_dist_g.R . structure_to_genind.R . Full graph4lg package functions and examples
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