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gadget3
View on CRAN: Click
here
Download and install gadget3 package within the R console
Install from CRAN:
install.packages("gadget3")
Install from Github:
library("remotes")
install_github("cran/gadget3")
Install by package version:
library("remotes")
install_version("gadget3", "0.12-1")
Attach the package and use:
library("gadget3")
Maintained by
Jamie Lentin
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-12-09
Latest Update: 2023-08-24
Description:
A framework to assist creation of marine ecosystem models,
generating either 'R' or 'C++' code which can then be optimised using
the 'TMB' package and standard 'R' tools. Principally designed to
reproduce gadget2 models in 'TMB', but can be extended beyond
gadget2's capabilities.
Kasper Kristensen, Anders Nielsen, Casper W. Berg, Hans Skaug, Bradley M. Bell (2016) "TMB: Automatic Differentiation and Laplace Approximation.".
Begley, J., & Howell, D. (2004) "An overview of Gadget, the globally applicable area-disaggregated general ecosystem toolbox. ICES.".
How to cite:
Jamie Lentin (2022). gadget3: Globally-Applicable Area Disaggregated General Ecosystem Toolbox V3. R package version 0.12-1, https://cran.r-project.org/web/packages/gadget3. Accessed 21 Nov. 2024.
Previous versions and publish date:
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Other R packages that gadget3 depends,
imports, suggests or enhances
Complete documentation for gadget3
Functions, R codes and Examples using
the gadget3 R package
Some associated functions: aaa_lang . aab_env . action_age . action_grow . action_mature . action_migrate . action_naturalmortality . action_predate . action_renewal . action_report . action_spawn . action_tagging . action_time . eval . formula_utils . language . likelihood_distribution . likelihood_random . likelihood_tagging_ckmr . likelihood_understocking . params . run_desc . run_r . run_tmb . step . stock . stock_age . stock_areas . stock_tag . stock_time . suitability . timedata . timevariable .
Some associated R codes: aaa_lang.R . aab_env.R . action_age.R . action_grow.R . action_mature.R . action_migrate.R . action_naturalmortality.R . action_predate.R . action_renewal.R . action_report.R . action_spawn.R . action_tagging.R . action_time.R . debug_utils.R . eval.R . formula_utils.R . likelihood_data.R . likelihood_distribution.R . likelihood_random.R . likelihood_tagging_ckmr.R . likelihood_understocking.R . params.R . run.R . run_desc.R . run_r.R . run_tmb.R . step.R . stock.R . stock_age.R . stock_areas.R . stock_manual.R . stock_tag.R . stock_time.R . suitability.R . test_utils.R . timedata.R . timevariable.R . Full gadget3 package functions and examples
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