Other packages > Find by keyword >

driveR  

Prioritizing Cancer Driver Genes Using Genomics Data
View on CRAN: Click here


Download and install driveR package within the R console
Install from CRAN:
install.packages("driveR")

Install from Github:
library("remotes")
install_github("cran/driveR")

Install by package version:
library("remotes")
install_version("driveR", "0.5.0")



Attach the package and use:
library("driveR")
Maintained by
Ege Ulgen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-18
Latest Update: 2023-08-19
Description:
Cancer genomes contain large numbers of somatic alterations but few genes drive tumor development. Identifying cancer driver genes is critical for precision oncology. Most of current approaches either identify driver genes based on mutational recurrence or using estimated scores predicting the functional consequences of mutations. 'driveR' is a tool for personalized or batch analysis of genomic data for driver gene prioritization by combining genomic information and prior biological knowledge. As features, 'driveR' uses coding impact metaprediction scores, non-coding impact scores, somatic copy number alteration scores, hotspot gene/double-hit gene condition, 'phenolyzer' gene scores and memberships to cancer-related KEGG pathways. It uses these features to estimate cancer-type-specific probability for each gene of being a cancer driver using the related task of a multi-task learning classification model. The method is described in detail in Ulgen E, Sezerman OU. 2021. driveR: driveR: a novel method for prioritizing cancer driver genes using somatic genomics data. BMC Bioinformatics .
How to cite:
Ege Ulgen (2020). driveR: Prioritizing Cancer Driver Genes Using Genomics Data. R package version 0.5.0, https://cran.r-project.org/web/packages/driveR. Accessed 28 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:33), 0.1.1 (2020-11-18 11:10), 0.2.0 (2020-11-19 22:40), 0.2.1 (2020-11-26 01:30), 0.3.0 (2022-01-18 08:42), 0.4.0 (2022-08-15 15:30), 0.4.1 (2023-08-19 16:02)
Other packages that cited driveR R package
View driveR citation profile
Other R packages that driveR depends, imports, suggests or enhances
Complete documentation for driveR
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ncdf4  
Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
Provides a high-level R interface to data files written using Unidata's netCDF library (version 4 or ...
Download / Learn more Package Citations See dependency  
msamp  
Estimate Sample Size to Detect Bacterial Contamination in a Product Lot
Estimates the sample size needed to detect microbial contamination in a lot with a user-specified d ...
Download / Learn more Package Citations See dependency  
NPHazardRate  
Nonparametric Hazard Rate Estimation
Provides functions and examples for histogram, kernel (classical, variable bandwidth and transformat ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
cats  
Cohort Platform Trial Simulation
Cohort plAtform Trial Simulation whereby every cohort consists of two arms, control and experimenta ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA