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diveRsity  

A Comprehensive, General Purpose Population Genetics Analysis Package
View on CRAN: Click here


Download and install diveRsity package within the R console
Install from CRAN:
install.packages("diveRsity")

Install from Github:
library("remotes")
install_github("cran/diveRsity")

Install by package version:
library("remotes")
install_version("diveRsity", "1.9.90")



Attach the package and use:
library("diveRsity")
Maintained by
Kevin Keenan
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-08-14
Latest Update: 2023-01-23
Description:
Allows the calculation of both genetic diversity partitionstatistics genetic differentiation statistics and locus informativenessfor ancestry assignment.It also provides users with various option to calculatebootstrapped 95 confidence intervals both across locifor pairwise population comparisons and to plot these results interactively.Parallel computing capabilities and pairwise results withoutbootstrapping are provided.Also calculates F-statistics from Weir and Cockerham 1984.Various plotting features are provided as well as Chi-square tests ofgenetic heterogeneity.Functionality for the calculation of various diversity parameters ispossible for RAD-seq derived SNP data sets containing thousands of marker loci.A shiny application for the development of microsatellite multiplexes isalso available.
How to cite:
Kevin Keenan (2012). diveRsity: A Comprehensive, General Purpose Population Genetics Analysis Package. R package version 1.9.90, https://cran.r-project.org/web/packages/diveRsity
Previous versions and publish date:
1.0 (2012-08-14 09:21), 1.2.2 (2012-09-12 10:44), 1.2.3 (2012-10-05 16:57), 1.3.2 (2012-11-08 13:26), 1.3.6 (2013-01-04 12:04), 1.4.2 (2013-01-26 22:13), 1.4.4 (2013-03-05 16:03), 1.4.6 (2013-04-01 18:09), 1.5.0 (2013-05-22 20:20), 1.5.3 (2013-09-11 20:52), 1.5.5 (2013-10-01 17:36), 1.6.1 (2013-12-04 21:20), 1.7.6 (2014-01-22 21:02), 1.9.5 (2014-04-29 15:38), 1.9.73 (2014-12-22 18:11), 1.9.89 (2016-12-09 08:03), 1.9.90 (2017-04-04 12:59)
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