Other packages > Find by keyword >

diffeRenTES  

Computation of TES-Based Cell Differentiation Trees
View on CRAN: Click here


Download and install diffeRenTES package within the R console
Install from CRAN:
install.packages("diffeRenTES")

Install from Github:
library("remotes")
install_github("cran/diffeRenTES")

Install by package version:
library("remotes")
install_version("diffeRenTES", "0.3.2")



Attach the package and use:
library("diffeRenTES")
Maintained by
Michele Braccini
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-04-28
Latest Update: 2022-04-28
Description:
Computes the ATM (Attractor Transition Matrix) structure and the tree-like structure describing the cell differentiation process (based on the Threshold Ergodic Set concept introduced by Serra and Villani), starting from the Boolean networks with synchronous updating scheme of the 'BoolNet' R package. TESs (Threshold Ergodic Sets) are the mathematical abstractions that represent the different cell types arising during ontogenesis. TESs and the powerful model of biological differentiation based on Boolean networks to which it belongs have been firstly described in "A Dynamical Model of Genetic Networks for Cell Differentiation" Villani M, Barbieri A, Serra R (2011) A Dynamical Model of Genetic Networks for Cell Differentiation. PLOS ONE 6(3): e17703.
How to cite:
Michele Braccini (2022). diffeRenTES: Computation of TES-Based Cell Differentiation Trees. R package version 0.3.2, https://cran.r-project.org/web/packages/diffeRenTES. Accessed 21 Nov. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited diffeRenTES R package
View diffeRenTES citation profile
Other R packages that diffeRenTES depends, imports, suggests or enhances
Complete documentation for diffeRenTES
Functions, R codes and Examples using the diffeRenTES R package
Some associated functions: getATM . getTESs . saveDifferentiationTreeToFile . 
Some associated R codes: functions.R .  Full diffeRenTES package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

RcppHNSW  
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R int ...
Download / Learn more Package Citations See dependency  
crossrun  
Joint Distribution of Number of Crossings and Longest Run
Joint distribution of number of crossings and the longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency  
kgschart  
KGS Rank Graph Parser
Restore underlining numeric data from rating history graph of KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency  
pkgdepends  
Package Dependency Resolution and Downloads
Find recursive dependencies of 'R' packages from various sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency  
SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
deductive  
Data Correction and Imputation Using Deductive Methods
Attempt to repair inconsistencies and missing values in data records by using information from vali ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA