Other packages > Find by keyword >

diffeRenTES  

Computation of TES-Based Cell Differentiation Trees
View on CRAN: Click here


Download and install diffeRenTES package within the R console
Install from CRAN:
install.packages("diffeRenTES")

Install from Github:
library("remotes")
install_github("cran/diffeRenTES")

Install by package version:
library("remotes")
install_version("diffeRenTES", "0.3.2")



Attach the package and use:
library("diffeRenTES")
Maintained by
Michele Braccini
[Scholar Profile | Author Map]
First Published: 2022-04-28
Latest Update: 2022-04-28
Description:
Computes the ATM (Attractor Transition Matrix) structure and the tree-like structure describing the cell differentiation process (based on the Threshold Ergodic Set concept introduced by Serra and Villani), starting from the Boolean networks with synchronous updating scheme of the 'BoolNet' R package. TESs (Threshold Ergodic Sets) are the mathematical abstractions that represent the different cell types arising during ontogenesis. TESs and the powerful model of biological differentiation based on Boolean networks to which it belongs have been firstly described in "A Dynamical Model of Genetic Networks for Cell Differentiation" Villani M, Barbieri A, Serra R (2011) A Dynamical Model of Genetic Networks for Cell Differentiation. PLOS ONE 6(3): e17703.
How to cite:
Michele Braccini (2022). diffeRenTES: Computation of TES-Based Cell Differentiation Trees. R package version 0.3.2, https://cran.r-project.org/web/packages/diffeRenTES. Accessed 10 May. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited diffeRenTES R package
View diffeRenTES citation profile
Other R packages that diffeRenTES depends, imports, suggests or enhances
Complete documentation for diffeRenTES
Functions, R codes and Examples using the diffeRenTES R package
Some associated functions: getATM . getTESs . saveDifferentiationTreeToFile . 
Some associated R codes: functions.R .  Full diffeRenTES package functions and examples
Downloads during the last 30 days
04/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/0205/0305/0405/0505/0605/0705/0805/09Downloads for diffeRenTES0246810121416182022TrendBars

Today's Hot Picks in Authors and Packages

hdpGLM  
Hierarchical Dirichlet Process Generalized Linear Models
Implementation of MCMC algorithms to estimate the Hierarchical Dirichlet Process Generalized Linear ...
Download / Learn more Package Citations See dependency  
specklestar  
Reduction of Speckle Data from BTA 6-m Telescope
A set of functions for obtaining positional parameters and magnitude difference between components o ...
Download / Learn more Package Citations See dependency  
dataprep  
Efficient and Flexible Data Preprocessing Tools
Efficiently and flexibly preprocess data using a set of data filtering, deletion, and interpolation ...
Download / Learn more Package Citations See dependency  
distreg.vis  
Framework for the Visualization of Distributional Regression Models
Functions for visualizing distributional regression models fitted using the 'gamlss', 'bamlss' or 'b ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

24,205

R Packages

207,311

Dependencies

65,402

Author Associations

24,206

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA