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denovolyzeR
View on CRAN: Click
here
Download and install denovolyzeR package within the R console
Install from CRAN:
install.packages("denovolyzeR")
Install from Github:
library("remotes")
install_github("cran/denovolyzeR") Install by package version:
library("remotes")
install_version("denovolyzeR", "0.2.0") Attach the package and use:
library("denovolyzeR")
Maintained by
James Ware
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-04-09
Latest Update: 2016-08-01
Description:
An integrated toolset for the analysis of de novo (sporadic)
genetic sequence variants. denovolyzeR implements a mutational model that
estimates the probability of a de novo genetic variant arising in each human
gene, from which one can infer the expected number of de novo variants in a
given population size. Observed variant frequencies can then be compared against
expectation in a Poisson framework. denovolyzeR provides a suite of functions
to implement these analyses for the interpretation of de novo variation in human
disease.
How to cite:
James Ware (2015). denovolyzeR: Statistical Analyses of De Novo Genetic Variants. R package version 0.2.0, https://cran.r-project.org/web/packages/denovolyzeR. Accessed 10 Jun. 2026.
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imports, suggests or enhances
Complete documentation for denovolyzeR
Functions, R codes and Examples using
the denovolyzeR R package
Some associated functions: PermuteMultiHits . autismDeNovos . denovolyze . denovolyzeMultiHits . denovolyzeR . fmrpGenes . parseInput . viewProbabilityTable .
Some associated R codes: FMRPgenes.doc.R . PermuteMultiHits.R . autismDeNovos.doc.R . denovolyze.R . denovolyzeMultiHits.R . denovolyzeR.doc.R . parseInput.R . viewProbabilityTable.R . Full denovolyzeR package functions and examples
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