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dendextend  

Extending 'dendrogram' Functionality in R
View on CRAN: Click here


Download and install dendextend package within the R console
Install from CRAN:
install.packages("dendextend")

Install from Github:
library("remotes")
install_github("cran/dendextend")

Install by package version:
library("remotes")
install_version("dendextend", "1.17.1")



Attach the package and use:
library("dendextend")
Maintained by
Tal Galili
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-02-03
Latest Update: 2023-03-25
Description:
Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.
How to cite:
Tal Galili (2014). dendextend: Extending 'dendrogram' Functionality in R. R package version 1.17.1, https://cran.r-project.org/web/packages/dendextend
Previous versions and publish date:
0.12.2 (2014-02-03 12:43), 0.14.2 (2014-03-15 16:35), 0.16.1 (2014-07-26 19:48), 0.17.1 (2014-08-19 22:34), 0.17.5 (2014-09-22 14:10), 0.18.3 (2015-01-31 21:57), 1.0.1 (2015-06-28 16:50), 1.1.0 (2015-07-31 00:57), 1.1.2 (2015-10-31 16:16), 1.1.8 (2016-02-10 18:57), 1.2.0 (2016-06-22 10:15), 1.3.0 (2016-08-27 14:17), 1.4.0 (2017-01-21 23:17), 1.5.0 (2017-03-24 21:08), 1.5.2 (2017-03-28 10:45), 1.6.0 (2017-11-13 12:54), 1.7.0 (2018-02-11 15:39), 1.8.0 (2018-05-03 13:02), 1.9.0 (2018-10-19 10:30), 1.10.0 (2019-03-15 21:03), 1.12.0 (2019-05-11 14:30), 1.13.2 (2019-12-02 21:00), 1.13.3 (2020-02-08 20:10), 1.13.4 (2020-02-28 23:40), 1.14.0 (2020-08-26 18:11), 1.15.1 (2021-05-08 22:10), 1.15.2 (2021-10-28 15:30), 1.16.0 (2022-07-04 20:10)
Other packages that cited dendextend R package
View dendextend citation profile
Other R packages that dendextend depends, imports, suggests or enhances
Functions, R codes and Examples using the dendextend R package
Some associated functions: Bk . Bk_permutations . Bk_plot . DendSer.dendrogram . FM_index . FM_index_R . FM_index_permutation . all.equal.dendrogram . all_couple_rotations_at_k . all_unique . as.dendlist . as.phylo.dendrogram . as_hclust_fixed . assign_dendextend_options . assign_values_to_branches_edgePar . assign_values_to_leaves_edgePar . assign_values_to_leaves_nodePar . assign_values_to_nodes_nodePar . bakers_gamma_for_2_k_matrix . branches_attr_by_clusters . branches_attr_by_labels . branches_attr_by_lists . circlize_dendrogram . click_rotate . collapse_branch . collapse_labels . color_branches . color_labels . color_unique_labels . colored_bars . colored_dots . common_subtrees_clusters . cor.dendlist . cor_FM_index . cor_bakers_gamma . cor_common_nodes . cor_cophenetic . count_terminal_nodes . cut_lower_fun . cutree-methods . cutree_1h.dendrogram . cutree_1k.dendrogram . dend_diff . dendextend-package . dendextend_options . dendlist . depth . dist.dendlist . dist_long . distinct_edges . duplicate_leaf . entanglement . fac2num . find_dend . find_dendrogram . find_k . fix_members_attr.dendrogram . flatten.dendrogram . flip_leaves . get_branches_heights . get_childrens_heights . get_leaves_attr . get_leaves_branches_attr . get_leaves_branches_col . get_leaves_edgePar . get_leaves_nodePar . get_nodes_attr . get_nodes_xy . get_root_branches_attr . get_subdendrograms . ggdend . hang.dendrogram . has_component_in_attribute . heights_per_k.dendrogram . highlight_branches . highlight_distinct_edges . identify.dendrogram . intersect_trees . is.natural.number . is_null_list . is_some_class . khan . labels-assign . labels_cex . labels_colors . ladderize . leaf_Colors . lowest_common_branch . match_order_by_labels . match_order_dendrogram_by_old_order . na_locf . nleaves . nnodes . noded_with_condition . order.dendrogram-assign . order.hclust . partition_leaves . plot_horiz.dendrogram . prune . prune_common_subtrees.dendlist . prune_leaf . pvclust_edges . pvclust_show_signif . pvclust_show_signif_gradient . pvrect2 . raise.dendrogram . rank_branches . rank_order.dendrogram . rank_values_with_clusters . rect.dendrogram . reexports . reindex_dend . remove_branches_edgePar . remove_leaves_nodePar . remove_nodes_nodePar . rllply . rotate . rotate_DendSer . sample.dendrogram . seriate_dendrogram . set . set_labels . shuffle . sort_2_clusters_vectors . sort_dist_mat . sort_levels_values . tanglegram . theme_dendro . unbranch . unclass_dend . untangle . untangle_DendSer . untangle_random_search . untangle_step_rotate_1side . untangle_step_rotate_2side . which_leaf . which_node . 
Some associated R codes: DendSer.R . Hmisc.R . all.equal.R . ape.R . as.dendrogram.randomForest.R . attr_access.R . bk_method.R . branches_attr_by.R . circlize.R . color_branches.R . colored_bars.R . colored_dots.R . common_subtrees.R . cor.dendlist.R . cor_bakers_gamma.R . cor_cophenetic.R . cut_lower_fun.R . cutree.dendrogram.R . data.R . dendextend-package.R . dendextend.R . dendextend_options.R . dendlist.R . depth.R . dist_long.R . distinct_edges.R . entanglement.R . find_dend.R . find_k.R . get_nodes_xy.R . get_subdendrograms.R . ggdend.R . ggdendro.R . has_edgePar.R . highlight_branches.R . is.functions.R . labels.R . labels_colors.R . magrittr.R . nleaves.R . noded_with_condition.R . prune.R . pvclust.R . rainbow_fun.R . rect.dendrogram.R . rotate.R . sample.dendrogram.R . seriate_dendrogram.R . set.dendrogram.R . stats_imports.R . tanglegram.R . unbranch.R . untangle.R . zzz.R .  Full dendextend package functions and examples
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