Other packages > Find by keyword >

cxr  

A Toolbox for Modelling Species Coexistence in R
View on CRAN: Click here


Download and install cxr package within the R console
Install from CRAN:
install.packages("cxr")

Install from Github:
library("remotes")
install_github("cran/cxr")

Install by package version:
library("remotes")
install_version("cxr", "1.1.1")



Attach the package and use:
library("cxr")
Maintained by
David Garcia-Callejas
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-16
Latest Update: 2023-10-26
Description:
Recent developments in modern coexistence theory have advanced our understanding on how species are able to persist and co-occur with other species at varying abundances. However, applying this mathematical framework to empirical data is still challenging, precluding a larger adoption of the theoretical tools developed by empiricists. This package provides a complete toolbox for modelling interaction effects between species, and calculate fitness and niche differences. The functions are flexible, may accept covariates, and different fitting algorithms can be used. A full description of the underlying methods is available in Garc
How to cite:
David Garcia-Callejas (2021). cxr: A Toolbox for Modelling Species Coexistence in R. R package version 1.1.1, https://cran.r-project.org/web/packages/cxr
Previous versions and publish date:
1.0.0 (2021-04-16 11:20)
Other packages that cited cxr R package
View cxr citation profile
Other R packages that cxr depends, imports, suggests or enhances
Functions, R codes and Examples using the cxr R package
Some associated functions: BH_er_lambdacov_global_effectcov_global_responsecov_global . BH_er_lambdacov_none_effectcov_none_responsecov_none . BH_pm_alpha_global_lambdacov_none_alphacov_none . BH_pm_alpha_none_lambdacov_none_alphacov_none . BH_pm_alpha_pairwise_lambdacov_global_alphacov_global . BH_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise . BH_pm_alpha_pairwise_lambdacov_none_alphacov_none . BH_project_alpha_global_lambdacov_none_alphacov_none . BH_project_alpha_none_lambdacov_none_alphacov_none . BH_project_alpha_pairwise_lambdacov_global_alphacov_global . BH_project_alpha_pairwise_lambdacov_global_alphacov_pairwise . BH_project_alpha_pairwise_lambdacov_none_alphacov_none . LV_er_lambdacov_global_effectcov_global_responsecov_global . LV_er_lambdacov_none_effectcov_none_responsecov_none . LV_pm_alpha_global_lambdacov_none_alphacov_none . LV_pm_alpha_none_lambdacov_none_alphacov_none . LV_pm_alpha_pairwise_lambdacov_global_alphacov_global . LV_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise . LV_pm_alpha_pairwise_lambdacov_none_alphacov_none . LV_project_alpha_global_lambdacov_none_alphacov_none . LV_project_alpha_none_lambdacov_none_alphacov_none . LV_project_alpha_pairwise_lambdacov_global_alphacov_global . LV_project_alpha_pairwise_lambdacov_global_alphacov_pairwise . LV_project_alpha_pairwise_lambdacov_none_alphacov_none . LW_er_lambdacov_global_effectcov_global_responsecov_global . LW_er_lambdacov_none_effectcov_none_responsecov_none . LW_pm_alpha_global_lambdacov_none_alphacov_none . LW_pm_alpha_none_lambdacov_none_alphacov_none . LW_pm_alpha_pairwise_lambdacov_global_alphacov_global . LW_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise . LW_pm_alpha_pairwise_lambdacov_none_alphacov_none . LW_project_alpha_global_lambdacov_none_alphacov_none . LW_project_alpha_none_lambdacov_none_alphacov_none . LW_project_alpha_pairwise_lambdacov_global_alphacov_global . LW_project_alpha_pairwise_lambdacov_global_alphacov_pairwise . LW_project_alpha_pairwise_lambdacov_none_alphacov_none . RK_er_lambdacov_global_effectcov_global_responsecov_global . RK_er_lambdacov_none_effectcov_none_responsecov_none . RK_pm_alpha_global_lambdacov_none_alphacov_none . RK_pm_alpha_none_lambdacov_none_alphacov_none . RK_pm_alpha_pairwise_lambdacov_global_alphacov_global . RK_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise . RK_pm_alpha_pairwise_lambdacov_none_alphacov_none . RK_project_alpha_global_lambdacov_none_alphacov_none . RK_project_alpha_none_lambdacov_none_alphacov_none . RK_project_alpha_pairwise_lambdacov_global_alphacov_global . RK_project_alpha_pairwise_lambdacov_global_alphacov_pairwise . RK_project_alpha_pairwise_lambdacov_none_alphacov_none . abundance . abundance_projection . avg_fitness_diff . build_param . calculate_densities . competitive_ability . cxr-package . cxr_er_bootstrap . cxr_er_fit . cxr_generate_test_data . cxr_pm_bootstrap . cxr_pm_fit . cxr_pm_multifit . densities_to_df . fill_demography_matrix . fill_dispersal_matrix . fill_transition_matrix . fitness_ratio . generate_vital_rate_coefs . glm_example_coefs . metapopulation_example_param . neigh_list . niche_overlap . salinity_list . spatial_sampling . species_fitness . species_rates . summary.cxr_er_fit . summary.cxr_pm_fit . summary.cxr_pm_multifit . vec_permutation_matrices . vital_rate . 
Some associated R codes: BH_competitive_ability.R . BH_demographic_ratio.R . BH_er_lambdacov_global_effectcov_global_responsecov_global.R . BH_er_lambdacov_none_effectcov_none_responsecov_none.R . BH_pm_alpha_global_lambdacov_none_alphacov_none.R . BH_pm_alpha_none_lambdacov_none_alphacov_none.R . BH_pm_alpha_pairwise_lambdacov_global_alphacov_global.R . BH_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . BH_pm_alpha_pairwise_lambdacov_none_alphacov_none.R . BH_project_alpha_global_lambdacov_none_alphacov_none.R . BH_project_alpha_none_lambdacov_none_alphacov_none.R . BH_project_alpha_pairwise_lambdacov_global_alphacov_global.R . BH_project_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . BH_project_alpha_pairwise_lambdacov_none_alphacov_none.R . BH_species_fitness.R . LV_competitive_ability.R . LV_demographic_ratio.R . LV_er_lambdacov_global_effectcov_global_responsecov_global.R . LV_er_lambdacov_none_effectcov_none_responsecov_none.R . LV_pm_alpha_global_lambdacov_none_alphacov_none.R . LV_pm_alpha_none_lambdacov_none_alphacov_none.R . LV_pm_alpha_pairwise_lambdacov_global_alphacov_global.R . LV_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . LV_pm_alpha_pairwise_lambdacov_none_alphacov_none.R . LV_project_alpha_global_lambdacov_none_alphacov_none.R . LV_project_alpha_none_lambdacov_none_alphacov_none.R . LV_project_alpha_pairwise_lambdacov_global_alphacov_global.R . LV_project_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . LV_project_alpha_pairwise_lambdacov_none_alphacov_none.R . LV_species_fitness.R . LW_competitive_ability.R . LW_demographic_ratio.R . LW_er_lambdacov_global_effectcov_global_responsecov_global.R . LW_er_lambdacov_none_effectcov_none_responsecov_none.R . LW_pm_alpha_global_lambdacov_none_alphacov_none.R . LW_pm_alpha_none_lambdacov_none_alphacov_none.R . LW_pm_alpha_pairwise_lambdacov_global_alphacov_global.R . LW_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . LW_pm_alpha_pairwise_lambdacov_none_alphacov_none.R . LW_project_alpha_global_lambdacov_none_alphacov_none.R . LW_project_alpha_none_lambdacov_none_alphacov_none.R . LW_project_alpha_pairwise_lambdacov_global_alphacov_global.R . LW_project_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . LW_project_alpha_pairwise_lambdacov_none_alphacov_none.R . LW_species_fitness.R . RK_competitive_ability.R . RK_demographic_ratio.R . RK_er_lambdacov_global_effectcov_global_responsecov_global.R . RK_er_lambdacov_none_effectcov_none_responsecov_none.R . RK_pm_alpha_global_lambdacov_none_alphacov_none.R . RK_pm_alpha_none_lambdacov_none_alphacov_none.R . RK_pm_alpha_pairwise_lambdacov_global_alphacov_global.R . RK_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . RK_pm_alpha_pairwise_lambdacov_none_alphacov_none.R . RK_project_alpha_global_lambdacov_none_alphacov_none.R . RK_project_alpha_none_lambdacov_none_alphacov_none.R . RK_project_alpha_pairwise_lambdacov_global_alphacov_global.R . RK_project_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . RK_project_alpha_pairwise_lambdacov_none_alphacov_none.R . RK_species_fitness.R . abundance.R . abundance_projection.R . avg_fitness_diff.R . build_param.R . calculate_densities.R . competitive_ability.R . cxr-package.R . cxr_check_initial_values.R . cxr_check_input_data.R . cxr_check_input_er.R . cxr_check_method_boundaries.R . cxr_check_pm_input.R . cxr_competitive_response.R . cxr_demographic_ratio.R . cxr_er_bootstrap.R . cxr_er_fit.R . cxr_er_model_template.R . cxr_generate_test_data.R . cxr_get_init_params.R . cxr_get_model_bounds.R . cxr_init_er_params.R . cxr_model_template.R . cxr_pm_bootstrap.R . cxr_pm_fit.R . cxr_pm_model_template.R . cxr_pm_multifit.R . cxr_retrieve_er_params.R . cxr_retrieve_params.R . cxr_return_init_length.R . cxr_sort_params.R . cxr_structural_fitness_diff.R . densities_to_df.R . fill_demography_matrix.R . fill_dispersal_matrix.R . fill_transition_matrix.R . fitness_ratio.R . generate_vital_rate_coefs.R . get_densities.R . glm_example_coefs.R . metapopulation_example_param.R . neigh_list.R . niche_overlap.R . niche_overlap_MCT.R . niche_overlap_SA.R . salinity_list.R . spatial_sampling.R . species_fitness.R . species_rates.R . summary.R . vec_permutation_matrices.R . vital_rate.R .  Full cxr package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

QuantileNPCI  
Nonparametric Confidence Intervals for Quantiles
Based on Alan D. Hutson (1999) , "Calculating nonparametric confidence i ...
Download / Learn more Package Citations See dependency  
Maintainer: Li Yan (view profile)
factorplot  
Graphical Presentation of Simple Contrasts
Methods to calculate, print, summarize and plot pairwise differences from GLMs, GLHT or Multinomial ...
Download / Learn more Package Citations See dependency  
srm  
Structural Equation Modeling for the Social Relations Model
Provides functionality for structural equation modeling for the social relations model (Kenny & ...
Download / Learn more Package Citations See dependency  
FMCCSD  
Efficient Estimation of Clustered Current Status Data
Current status data abounds in the field of epidemiology and public health, where the only observab ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resizer for Images, Tables and Fancy Resizable Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
cdcfluview  
Retrieve Flu Season Data from the United States Centers for Disease Control and Prevention ("CDC") "FluView" Portal
The 'U.S.' Centers for Disease Control and Prevention (CDC) maintain a portal ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns