Other packages > Find by keyword >

cxr  

A Toolbox for Modelling Species Coexistence in R
View on CRAN: Click here


Download and install cxr package within the R console
Install from CRAN:
install.packages("cxr")

Install from Github:
library("remotes")
install_github("cran/cxr")

Install by package version:
library("remotes")
install_version("cxr", "1.1.1")



Attach the package and use:
library("cxr")
Maintained by
David Garcia-Callejas
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-16
Latest Update: 2023-10-26
Description:
Recent developments in modern coexistence theory have advanced our understanding on how species are able to persist and co-occur with other species at varying abundances. However, applying this mathematical framework to empirical data is still challenging, precluding a larger adoption of the theoretical tools developed by empiricists. This package provides a complete toolbox for modelling interaction effects between species, and calculate fitness and niche differences. The functions are flexible, may accept covariates, and different fitting algorithms can be used. A full description of the underlying methods is available in Garc
How to cite:
David Garcia-Callejas (2021). cxr: A Toolbox for Modelling Species Coexistence in R. R package version 1.1.1, https://cran.r-project.org/web/packages/cxr. Accessed 28 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:29), 1.0.0 (2021-04-16 11:20)
Other packages that cited cxr R package
View cxr citation profile
Other R packages that cxr depends, imports, suggests or enhances
Complete documentation for cxr
Functions, R codes and Examples using the cxr R package
Some associated functions: BH_er_lambdacov_global_effectcov_global_responsecov_global . BH_er_lambdacov_none_effectcov_none_responsecov_none . BH_pm_alpha_global_lambdacov_none_alphacov_none . BH_pm_alpha_none_lambdacov_none_alphacov_none . BH_pm_alpha_pairwise_lambdacov_global_alphacov_global . BH_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise . BH_pm_alpha_pairwise_lambdacov_none_alphacov_none . BH_project_alpha_global_lambdacov_none_alphacov_none . BH_project_alpha_none_lambdacov_none_alphacov_none . BH_project_alpha_pairwise_lambdacov_global_alphacov_global . BH_project_alpha_pairwise_lambdacov_global_alphacov_pairwise . BH_project_alpha_pairwise_lambdacov_none_alphacov_none . LV_er_lambdacov_global_effectcov_global_responsecov_global . LV_er_lambdacov_none_effectcov_none_responsecov_none . LV_pm_alpha_global_lambdacov_none_alphacov_none . LV_pm_alpha_none_lambdacov_none_alphacov_none . LV_pm_alpha_pairwise_lambdacov_global_alphacov_global . LV_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise . LV_pm_alpha_pairwise_lambdacov_none_alphacov_none . LV_project_alpha_global_lambdacov_none_alphacov_none . LV_project_alpha_none_lambdacov_none_alphacov_none . LV_project_alpha_pairwise_lambdacov_global_alphacov_global . LV_project_alpha_pairwise_lambdacov_global_alphacov_pairwise . LV_project_alpha_pairwise_lambdacov_none_alphacov_none . LW_er_lambdacov_global_effectcov_global_responsecov_global . LW_er_lambdacov_none_effectcov_none_responsecov_none . LW_pm_alpha_global_lambdacov_none_alphacov_none . LW_pm_alpha_none_lambdacov_none_alphacov_none . LW_pm_alpha_pairwise_lambdacov_global_alphacov_global . LW_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise . LW_pm_alpha_pairwise_lambdacov_none_alphacov_none . LW_project_alpha_global_lambdacov_none_alphacov_none . LW_project_alpha_none_lambdacov_none_alphacov_none . LW_project_alpha_pairwise_lambdacov_global_alphacov_global . LW_project_alpha_pairwise_lambdacov_global_alphacov_pairwise . LW_project_alpha_pairwise_lambdacov_none_alphacov_none . RK_er_lambdacov_global_effectcov_global_responsecov_global . RK_er_lambdacov_none_effectcov_none_responsecov_none . RK_pm_alpha_global_lambdacov_none_alphacov_none . RK_pm_alpha_none_lambdacov_none_alphacov_none . RK_pm_alpha_pairwise_lambdacov_global_alphacov_global . RK_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise . RK_pm_alpha_pairwise_lambdacov_none_alphacov_none . RK_project_alpha_global_lambdacov_none_alphacov_none . RK_project_alpha_none_lambdacov_none_alphacov_none . RK_project_alpha_pairwise_lambdacov_global_alphacov_global . RK_project_alpha_pairwise_lambdacov_global_alphacov_pairwise . RK_project_alpha_pairwise_lambdacov_none_alphacov_none . abundance . abundance_projection . avg_fitness_diff . build_param . calculate_densities . competitive_ability . cxr-package . cxr_er_bootstrap . cxr_er_fit . cxr_generate_test_data . cxr_pm_bootstrap . cxr_pm_fit . cxr_pm_multifit . densities_to_df . fill_demography_matrix . fill_dispersal_matrix . fill_transition_matrix . fitness_ratio . generate_vital_rate_coefs . glm_example_coefs . metapopulation_example_param . neigh_list . niche_overlap . salinity_list . spatial_sampling . species_fitness . species_rates . summary.cxr_er_fit . summary.cxr_pm_fit . summary.cxr_pm_multifit . vec_permutation_matrices . vital_rate . 
Some associated R codes: BH_competitive_ability.R . BH_demographic_ratio.R . BH_er_lambdacov_global_effectcov_global_responsecov_global.R . BH_er_lambdacov_none_effectcov_none_responsecov_none.R . BH_pm_alpha_global_lambdacov_none_alphacov_none.R . BH_pm_alpha_none_lambdacov_none_alphacov_none.R . BH_pm_alpha_pairwise_lambdacov_global_alphacov_global.R . BH_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . BH_pm_alpha_pairwise_lambdacov_none_alphacov_none.R . BH_project_alpha_global_lambdacov_none_alphacov_none.R . BH_project_alpha_none_lambdacov_none_alphacov_none.R . BH_project_alpha_pairwise_lambdacov_global_alphacov_global.R . BH_project_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . BH_project_alpha_pairwise_lambdacov_none_alphacov_none.R . BH_species_fitness.R . LV_competitive_ability.R . LV_demographic_ratio.R . LV_er_lambdacov_global_effectcov_global_responsecov_global.R . LV_er_lambdacov_none_effectcov_none_responsecov_none.R . LV_pm_alpha_global_lambdacov_none_alphacov_none.R . LV_pm_alpha_none_lambdacov_none_alphacov_none.R . LV_pm_alpha_pairwise_lambdacov_global_alphacov_global.R . LV_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . LV_pm_alpha_pairwise_lambdacov_none_alphacov_none.R . LV_project_alpha_global_lambdacov_none_alphacov_none.R . LV_project_alpha_none_lambdacov_none_alphacov_none.R . LV_project_alpha_pairwise_lambdacov_global_alphacov_global.R . LV_project_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . LV_project_alpha_pairwise_lambdacov_none_alphacov_none.R . LV_species_fitness.R . LW_competitive_ability.R . LW_demographic_ratio.R . LW_er_lambdacov_global_effectcov_global_responsecov_global.R . LW_er_lambdacov_none_effectcov_none_responsecov_none.R . LW_pm_alpha_global_lambdacov_none_alphacov_none.R . LW_pm_alpha_none_lambdacov_none_alphacov_none.R . LW_pm_alpha_pairwise_lambdacov_global_alphacov_global.R . LW_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . LW_pm_alpha_pairwise_lambdacov_none_alphacov_none.R . LW_project_alpha_global_lambdacov_none_alphacov_none.R . LW_project_alpha_none_lambdacov_none_alphacov_none.R . LW_project_alpha_pairwise_lambdacov_global_alphacov_global.R . LW_project_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . LW_project_alpha_pairwise_lambdacov_none_alphacov_none.R . LW_species_fitness.R . RK_competitive_ability.R . RK_demographic_ratio.R . RK_er_lambdacov_global_effectcov_global_responsecov_global.R . RK_er_lambdacov_none_effectcov_none_responsecov_none.R . RK_pm_alpha_global_lambdacov_none_alphacov_none.R . RK_pm_alpha_none_lambdacov_none_alphacov_none.R . RK_pm_alpha_pairwise_lambdacov_global_alphacov_global.R . RK_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . RK_pm_alpha_pairwise_lambdacov_none_alphacov_none.R . RK_project_alpha_global_lambdacov_none_alphacov_none.R . RK_project_alpha_none_lambdacov_none_alphacov_none.R . RK_project_alpha_pairwise_lambdacov_global_alphacov_global.R . RK_project_alpha_pairwise_lambdacov_global_alphacov_pairwise.R . RK_project_alpha_pairwise_lambdacov_none_alphacov_none.R . RK_species_fitness.R . abundance.R . abundance_projection.R . avg_fitness_diff.R . build_param.R . calculate_densities.R . competitive_ability.R . cxr-package.R . cxr_check_initial_values.R . cxr_check_input_data.R . cxr_check_input_er.R . cxr_check_method_boundaries.R . cxr_check_pm_input.R . cxr_competitive_response.R . cxr_demographic_ratio.R . cxr_er_bootstrap.R . cxr_er_fit.R . cxr_er_model_template.R . cxr_generate_test_data.R . cxr_get_init_params.R . cxr_get_model_bounds.R . cxr_init_er_params.R . cxr_model_template.R . cxr_pm_bootstrap.R . cxr_pm_fit.R . cxr_pm_model_template.R . cxr_pm_multifit.R . cxr_retrieve_er_params.R . cxr_retrieve_params.R . cxr_return_init_length.R . cxr_sort_params.R . cxr_structural_fitness_diff.R . densities_to_df.R . fill_demography_matrix.R . fill_dispersal_matrix.R . fill_transition_matrix.R . fitness_ratio.R . generate_vital_rate_coefs.R . get_densities.R . glm_example_coefs.R . metapopulation_example_param.R . neigh_list.R . niche_overlap.R . niche_overlap_MCT.R . niche_overlap_SA.R . salinity_list.R . spatial_sampling.R . species_fitness.R . species_rates.R . summary.R . vec_permutation_matrices.R . vital_rate.R .  Full cxr package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

cats  
Cohort Platform Trial Simulation
Cohort plAtform Trial Simulation whereby every cohort consists of two arms, control and experimenta ...
Download / Learn more Package Citations See dependency  
NPHazardRate  
Nonparametric Hazard Rate Estimation
Provides functions and examples for histogram, kernel (classical, variable bandwidth and transformat ...
Download / Learn more Package Citations See dependency  
msamp  
Estimate Sample Size to Detect Bacterial Contamination in a Product Lot
Estimates the sample size needed to detect microbial contamination in a lot with a user-specified d ...
Download / Learn more Package Citations See dependency  
ncdf4  
Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
Provides a high-level R interface to data files written using Unidata's netCDF library (version 4 or ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA