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colocPropTest  

Proportional Testing for Colocalisation Analysis
View on CRAN: Click here


Download and install colocPropTest package within the R console
Install from CRAN:
install.packages("colocPropTest")

Install from Github:
library("remotes")
install_github("cran/colocPropTest")

Install by package version:
library("remotes")
install_version("colocPropTest", "0.9.1")



Attach the package and use:
library("colocPropTest")
Maintained by
Chris Wallace
[Scholar Profile | Author Map]
First Published: 2024-06-11
Latest Update: 2024-06-11
Description:
Colocalisation analysis tests whether two traits share a causal genetic variant in a specified genomic region. Proportional testing for colocalisation has been previously proposed [Wallace (2013) <doi:10.1002/gepi.21765>], but is reimplemented here to overcome barriers to its adoption. Its use is complementary to the fine- mapping based colocalisation method in the 'coloc' package, and may be used in particular to identify false "H3" conclusions in 'coloc'.
How to cite:
Chris Wallace (2024). colocPropTest: Proportional Testing for Colocalisation Analysis. R package version 0.9.1, https://cran.r-project.org/web/packages/colocPropTest. Accessed 07 Apr. 2025.
Previous versions and publish date:
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Complete documentation for colocPropTest
Functions, R codes and Examples using the colocPropTest R package
Full colocPropTest package functions and examples
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