Other packages > Find by keyword >

colocPropTest  

Proportional Testing for Colocalisation Analysis
View on CRAN: Click here


Download and install colocPropTest package within the R console
Install from CRAN:
install.packages("colocPropTest")

Install from Github:
library("remotes")
install_github("cran/colocPropTest")

Install by package version:
library("remotes")
install_version("colocPropTest", "0.9.1")



Attach the package and use:
library("colocPropTest")
Maintained by
Chris Wallace
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-06-11
Latest Update: 2024-06-11
Description:
Colocalisation analysis tests whether two traits share a causal genetic variant in a specified genomic region. Proportional testing for colocalisation has been previously proposed [Wallace (2013) <doi:10.1002/gepi.21765>], but is reimplemented here to overcome barriers to its adoption. Its use is complementary to the fine- mapping based colocalisation method in the 'coloc' package, and may be used in particular to identify false "H3" conclusions in 'coloc'.
How to cite:
Chris Wallace (2024). colocPropTest: Proportional Testing for Colocalisation Analysis. R package version 0.9.1, https://cran.r-project.org/web/packages/colocPropTest
Previous versions and publish date:
No previous versions
Other packages that cited colocPropTest R package
View colocPropTest citation profile
Other R packages that colocPropTest depends, imports, suggests or enhances
Functions, R codes and Examples using the colocPropTest R package
Full colocPropTest package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

MPCI  
Multivariate Process Capability Indices (MPCI)
It performs the followings Multivariate Process Capability Indices: Shahriari et al. (1995) Multivar ...
Download / Learn more Package Citations See dependency  
interplex  
Coercion Methods for Simplicial Complex Data Structures
Computational topology, which enables topological data analysis (TDA), makes pervasive use of abstr ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
largeList  
Serialization Interface for Large List Objects
Functions to write or append a R list to a file, as well as read, remove, modify elements from it wi ...
Download / Learn more Package Citations See dependency  
PCL  
Proximal Causal Learning
We fit causal models using proxies. We implement two stage proximal least squares estimator. E.J. Tc ...
Download / Learn more Package Citations See dependency  
DelayedEffect.Design  
Sample Size and Power Calculations using the APPLE, SEPPLE, APPLE+ and SEPPLE+ Methods
Provides sample size and power calculations when the treatment time-lag effect is present and the la ...
Download / Learn more Package Citations See dependency  

22,431

R Packages

191,269

Dependencies

56,139

Author Associations

22,432

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns