Other packages > Find by keyword >

colocPropTest  

Proportional Testing for Colocalisation Analysis
View on CRAN: Click here


Download and install colocPropTest package within the R console
Install from CRAN:
install.packages("colocPropTest")

Install from Github:
library("remotes")
install_github("cran/colocPropTest")

Install by package version:
library("remotes")
install_version("colocPropTest", "0.9.3")



Attach the package and use:
library("colocPropTest")
Maintained by
Chris Wallace
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-06-11
Latest Update: 2024-06-11
Description:
Colocalisation analysis tests whether two traits share a causal genetic variant in a specified genomic region. Proportional testing for colocalisation has been previously proposed [Wallace (2013) <doi:10.1002/gepi.21765>], but is reimplemented here to overcome barriers to its adoption. Its use is complementary to the fine- mapping based colocalisation method in the 'coloc' package, and may be used in particular to identify false "H3" conclusions in 'coloc'.
How to cite:
Chris Wallace (2024). colocPropTest: Proportional Testing for Colocalisation Analysis. R package version 0.9.3, https://cran.r-project.org/web/packages/colocPropTest. Accessed 28 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:27), 0.9.1 (2024-06-11 13:30), 0.9.2 (2025-09-08 23:20)
Other packages that cited colocPropTest R package
View colocPropTest citation profile
Other R packages that colocPropTest depends, imports, suggests or enhances
Complete documentation for colocPropTest
Functions, R codes and Examples using the colocPropTest R package
Full colocPropTest package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

textmineR  
Functions for Text Mining and Topic Modeling
An aid for text mining in R, with a syntax that should be familiar to experienced R users. Provides ...
Download / Learn more Package Citations See dependency  
NPBayesImputeCat  
Non-Parametric Bayesian Multiple Imputation for Categorical Data
These routines create multiple imputations of missing at random categorical data, and create multipl ...
Download / Learn more Package Citations See dependency  
openintro  
Datasets and Supplemental Functions from 'OpenIntro' Textbooks and Labs
Supplemental functions and data for 'OpenIntro' resources, which includes open-source textbooks and ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
daqapo  
Data Quality Assessment for Process-Oriented Data
Provides a variety of methods to identify data quality issues in process-oriented data, which are us ...
Download / Learn more Package Citations See dependency  
ExplodeLayout  
Calculate Exploded Coordinates Based on Original Node Coordinates and Node Clustering Membership
Current layout algorithms such as Kamada Kawai do not take into consideration disjoint clusters in a ...
Download / Learn more Package Citations See dependency  

27,987

R Packages

239,283

Dependencies

74,234

Author Associations

27,988

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA