Other packages > Find by keyword >

ciftiTools  

Tools for Reading, Writing, Viewing and Manipulating CIFTI Files
View on CRAN: Click here


Download and install ciftiTools package within the R console
Install from CRAN:
install.packages("ciftiTools")

Install from Github:
library("remotes")
install_github("cran/ciftiTools")

Install by package version:
library("remotes")
install_version("ciftiTools", "0.16.1")



Attach the package and use:
library("ciftiTools")
Maintained by
Amanda Mejia
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-20
Latest Update: 2024-02-24
Description:
CIFTI files contain brain imaging data in "grayordinates," which represent the gray matter as cortical surface vertices (left and right) and subcortical voxels (cerebellum, basal ganglia, and other deep gray matter). 'ciftiTools' provides a unified environment for reading, writing, visualizing and manipulating CIFTI-format data. It supports the "dscalar," "dlabel," and "dtseries" intents. Grayordinate data is read in as a "xifti" object, which is structured for convenient access to the data and metadata, and includes support for surface geometry files to enable spatially-dependent functionality such as static or interactive visualizations and smoothing.
How to cite:
Amanda Mejia (2020). ciftiTools: Tools for Reading, Writing, Viewing and Manipulating CIFTI Files. R package version 0.16.1, https://cran.r-project.org/web/packages/ciftiTools. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.6.0 (2020-11-20 11:20), 0.2.2 (2021-03-16 06:50), 0.3.1 (2021-06-17 06:10), 0.4.3 (2021-08-19 15:40), 0.6.1 (2021-09-16 09:30), 0.7.0 (2021-11-17 16:00), 0.8.0 (2022-01-31 08:40), 0.9.0 (2022-05-16 08:10), 0.10.2 (2022-07-01 10:50), 0.11.0 (2023-01-23 14:40), 0.12.2 (2023-08-15 11:10), 0.13.4 (2024-01-21 14:03), 0.14.0 (2024-02-24 16:00), 0.15.1 (2024-06-25 10:00)
Other packages that cited ciftiTools R package
View ciftiTools citation profile
Other R packages that ciftiTools depends, imports, suggests or enhances
Complete documentation for ciftiTools
Functions, R codes and Examples using the ciftiTools R package
Some associated functions: ROI_brainstructures_Param_LR . ROY_BIG_BL . S3_Math . S3_Ops . S3_Summary . add_surf . all_integers . apply_parc . apply_xifti . area_original_Param . area_target_Param . as.matrix.xifti . as.metric_gifti . as.surf_gifti . as.xifti . assure_parc . boundary_mask_surf . brainstructures_Param_LR . brainstructures_Param_all . check_cifti_type . ciftiTools.checkOption . ciftiTools.files . ciftiTools.getOption . ciftiTools.listOptions . ciftiTools . ciftiTools.setOption . ciftiTools_msg . ciftiTools_warn . cifti_component_suffix . cifti_fname_Param . combine_xifti . confirm_wb_cmd_path . convert_xifti . coordlist_to_vol . crop_image . crop_vol . dim.xifti . dist_from_mask_surf . dot-onAttach . edit_mask_surf . even_vert_samp . expand_color_pal . expect_equal_xifti . faces_Param . fix_gifti_mwall . fix_xifti . flatten_xifti . format_path . get_cifti_extn . get_data_meta_from_cifti_xml . get_intn_meta_from_cifti_xml . get_kwargs . get_misc_meta_from_cifti_xml . get_wb_cmd_path . header_cifti . idx_Param . infer_resolution . info_cifti . is.3D_mask . is.cifti . is.fname . is.nummat . is.subcort_labs . is.surf . is.xifti . is.xifti_data . is.xifti_meta . labels_Description . load_parc . load_sub_parc . load_surf . make_color_pal . make_cortex . make_subcort . make_trans_mat . make_xifti . mask_Param_vertices . mask_surf . mask_with_boundary_surf . match_exactly . match_input . merge_kwargs . merge_xifti . move_from_mwall . move_to_mwall . ncol_xifti . newdata_xifti . nrow_xifti . original_fnames_Param_remapped . original_fnames_Param_resampled . pad_vol . parc_add_subcortex . parc_borders . parc_mean_mat . parc_vals_to_xifti . plot.surf . plot.xifti . radial_order_surf . read_cifti . read_cifti_convert . read_cifti_flat . read_cifti_separate . read_dir_Param_separated . read_surf . read_xifti2 . remap_cifti . remap_cifti_wrapper . remap_gifti . remove_xifti . resamp_method_Param . resamp_res_Param_optional . resamp_res_Param_required . resample_cifti . resample_cifti_components . resample_cifti_default_fname . resample_cifti_from_template . resample_cifti_wrapper . resample_gifti . resample_surf . rgl_interactive_plots_Description . rgl_static_plots_Description . rotate_surf . run_wb_cmd . scale_xifti . select_xifti . separate_cifti . separate_cifti_files . separate_cifti_wrapper . set_names_xifti . smooth_cifti . smooth_gifti . substructure_table . summary.surf . summary.xifti . supported_intents . surfL_Param_optional . surfL_fname_Param . surfL_original_fname_Param . surfL_target_fname_Param . surfR_Param_optional . surfR_fname_Param . surfR_original_fname_Param . surfR_target_fname_Param . surf_area . surface_plot_Params . sys_path . template_xifti . transform_xifti . unmask_cortex . unmask_subcortex . unvec_vol . use_color_pal . verbose_Param_FALSE . verbose_Param_TRUE . vert_adjacency . vertices_Param . view_comp . view_surf . view_xifti.cbar . view_xifti.cleg . view_xifti . view_xifti.title . view_xifti_surface.color . view_xifti_surface.draw_mesh . view_xifti_surface.draw_title . view_xifti_surface.mesh_val . view_xifti_surface . view_xifti_surface.surf_hemi . view_xifti_volume . vox_locations . wb_path_request . welcome_msg . write_cifti . write_cifti_from_separate . write_dir_Param_generic . write_label_table . write_metric_gifti . write_spheres . write_subcort_nifti . write_surf_gifti . write_xifti2 . x_Param_xifti . xifti_Param . xml_cifti . 
Some associated R codes: add_surf.R . apply_xifti.R . as.gifti.R . as.xifti.R . ciftiTools-package.R . ciftiTools.files.R . combine_xifti.R . convert_xifti.R . edit_mask_surf.R . even_vert_samp.R . expect_equal_xifti.R . fix_gifti_mwalls.R . fix_xifti.R . flatten_xifti.R . info_cifti.R . is.xifti.R . load_parc.R . load_surf.R . make_xifti.R . make_xifti_components.R . merge_xifti.R . move_mwall.R . newdata_xifti.R . onAttach.R . options.R . parc_utils.R . read_cifti.R . read_cifti_convert.R . read_cifti_flat.R . read_cifti_separate.R . read_surf.R . read_xifti2.R . remap_cifti.R . remap_gifti.R . remove_xifti.R . resample_cifti.R . resample_cifti_components.R . resample_cifti_from_template.R . resample_gifti.R . resample_surf.R . rotate_surf.R . rox_args_docs.R . scale_xifti.R . select_xifti.R . separate_cifti.R . set_names_xifti.R . smooth_cifti.R . smooth_gifti.R . surf_area.R . template_xifti.R . transform_xifti.R . utils.R . utils_color.R . utils_surf.R . utils_volume.R . utils_xifti.R . view_comp.R . view_surf.R . view_xifti.R . view_xifti_surface.R . view_xifti_volume.R . wb_cmd.R . write_cifti.R . write_cifti_from_separate.R . write_gifti.R . write_nifti.R . write_xifti2.R .  Full ciftiTools package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA