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ciftiTools
View on CRAN: Click
here
Download and install ciftiTools package within the R console
Install from CRAN:
install.packages("ciftiTools")
Install from Github:
library("remotes")
install_github("cran/ciftiTools") Install by package version:
library("remotes")
install_version("ciftiTools", "0.18.0") Attach the package and use:
library("ciftiTools")
Maintained by
Amanda Mejia
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-20
Latest Update: 2025-01-23
Description:
CIFTI files contain brain imaging data in "grayordinates," which
represent the gray matter as cortical surface vertices (left and right) and
subcortical voxels (cerebellum, basal ganglia, and other deep gray matter).
'ciftiTools' provides a unified environment for reading, writing,
visualizing and manipulating CIFTI-format data. It supports the "dscalar,"
"dlabel," and "dtseries" intents. Grayordinate data is read in as a "xifti"
object, which is structured for convenient access to the data and metadata,
and includes support for surface geometry files to enable
spatially-dependent functionality such as static or interactive
visualizations and smoothing.
How to cite:
Amanda Mejia (2020). ciftiTools: Tools for Reading, Writing, Viewing and Manipulating CIFTI Files. R package version 0.18.0, https://cran.r-project.org/web/packages/ciftiTools. Accessed 05 Jun. 2026.
Previous versions and publish date:
0.1.6.0 (2020-11-20 11:20), 0.2.2 (2021-03-16 06:50), 0.3.1 (2021-06-17 06:10), 0.4.3 (2021-08-19 15:40), 0.6.1 (2021-09-16 09:30), 0.7.0 (2021-11-17 16:00), 0.8.0 (2022-01-31 08:40), 0.9.0 (2022-05-16 08:10), 0.10.2 (2022-07-01 10:50), 0.11.0 (2023-01-23 14:40), 0.12.2 (2023-08-15 11:10), 0.13.4 (2024-01-21 14:03), 0.14.0 (2024-02-24 16:00), 0.15.1 (2024-06-25 10:00), 0.16.1 (2024-09-20 17:10), 0.17.4 (2025-01-23 23:20), 0.18.0 (2025-12-20 08:40)
Other packages that cited ciftiTools R package
View ciftiTools citation profile
Other R packages that ciftiTools depends,
imports, suggests or enhances
Complete documentation for ciftiTools
Functions, R codes and Examples using
the ciftiTools R package
Some associated functions: ROI_brainstructures_Param_LR . ROY_BIG_BL . S3_Math . S3_Ops . S3_Summary . add_surf . all_integers . apply_parc . apply_xifti . area_original_Param . area_target_Param . as.matrix.xifti . as.metric_gifti . as.surf_gifti . as.xifti . assure_parc . boundary_mask_surf . brainstructures_Param_LR . brainstructures_Param_all . check_cifti_type . ciftiTools.checkOption . ciftiTools.files . ciftiTools.getOption . ciftiTools.listOptions . ciftiTools . ciftiTools.setOption . ciftiTools_msg . ciftiTools_warn . cifti_component_suffix . cifti_fname_Param . combine_xifti . confirm_wb_cmd_path . convert_xifti . coordlist_to_vol . crop_image . crop_vol . dim.xifti . dist_from_mask_surf . dot-onAttach . edit_mask_surf . even_vert_samp . expand_color_pal . expect_equal_xifti . faces_Param . fix_gifti_mwall . fix_xifti . flatten_xifti . format_path . get_cifti_extn . get_data_meta_from_cifti_xml . get_intn_meta_from_cifti_xml . get_kwargs . get_misc_meta_from_cifti_xml . get_wb_cmd_path . header_cifti . idx_Param . infer_resolution . info_cifti . is.3D_mask . is.cifti . is.fname . is.nummat . is.subcort_labs . is.surf . is.xifti . is.xifti_data . is.xifti_meta . labels_Description . load_parc . load_sub_parc . load_surf . make_color_pal . make_cortex . make_subcort . make_trans_mat . make_xifti . mask_Param_vertices . mask_surf . mask_with_boundary_surf . match_exactly . match_input . merge_kwargs . merge_xifti . move_from_mwall . move_to_mwall . ncol_xifti . newdata_xifti . nrow_xifti . original_fnames_Param_remapped . original_fnames_Param_resampled . pad_vol . parc_add_subcortex . parc_borders . parc_mean_mat . parc_vals_to_xifti . plot.surf . plot.xifti . radial_order_surf . read_cifti . read_cifti_convert . read_cifti_flat . read_cifti_separate . read_dir_Param_separated . read_surf . read_xifti2 . remap_cifti . remap_cifti_wrapper . remap_gifti . remove_xifti . resamp_method_Param . resamp_res_Param_optional . resamp_res_Param_required . resample_cifti . resample_cifti_components . resample_cifti_default_fname . resample_cifti_from_template . resample_cifti_wrapper . resample_gifti . resample_surf . rgl_interactive_plots_Description . rgl_static_plots_Description . rotate_surf . run_wb_cmd . scale_xifti . select_xifti . separate_cifti . separate_cifti_files . separate_cifti_wrapper . set_names_xifti . smooth_cifti . smooth_gifti . substructure_table . summary.surf . summary.xifti . supported_intents . surfL_Param_optional . surfL_fname_Param . surfL_original_fname_Param . surfL_target_fname_Param . surfR_Param_optional . surfR_fname_Param . surfR_original_fname_Param . surfR_target_fname_Param . surf_area . surface_plot_Params . sys_path . template_xifti . transform_xifti . unmask_cortex . unmask_subcortex . unvec_vol . use_color_pal . verbose_Param_FALSE . verbose_Param_TRUE . vert_adjacency . vertices_Param . view_comp . view_surf . view_xifti.cbar . view_xifti.cleg . view_xifti . view_xifti.title . view_xifti_surface.color . view_xifti_surface.draw_mesh . view_xifti_surface.draw_title . view_xifti_surface.mesh_val . view_xifti_surface . view_xifti_surface.surf_hemi . view_xifti_volume . vox_locations . wb_path_request . welcome_msg . write_cifti . write_cifti_from_separate . write_dir_Param_generic . write_label_table . write_metric_gifti . write_spheres . write_subcort_nifti . write_surf_gifti . write_xifti2 . x_Param_xifti . xifti_Param . xml_cifti .
Some associated R codes: add_surf.R . apply_xifti.R . as.gifti.R . as.xifti.R . ciftiTools-package.R . ciftiTools.files.R . combine_xifti.R . convert_xifti.R . edit_mask_surf.R . even_vert_samp.R . expect_equal_xifti.R . fix_gifti_mwalls.R . fix_xifti.R . flatten_xifti.R . info_cifti.R . is.xifti.R . load_parc.R . load_surf.R . make_xifti.R . make_xifti_components.R . merge_xifti.R . move_mwall.R . newdata_xifti.R . onAttach.R . options.R . parc_utils.R . read_cifti.R . read_cifti_convert.R . read_cifti_flat.R . read_cifti_separate.R . read_surf.R . read_xifti2.R . remap_cifti.R . remap_gifti.R . remove_xifti.R . resample_cifti.R . resample_cifti_components.R . resample_cifti_from_template.R . resample_gifti.R . resample_surf.R . rotate_surf.R . rox_args_docs.R . scale_xifti.R . select_xifti.R . separate_cifti.R . set_names_xifti.R . smooth_cifti.R . smooth_gifti.R . surf_area.R . template_xifti.R . transform_xifti.R . utils.R . utils_color.R . utils_surf.R . utils_volume.R . utils_xifti.R . view_comp.R . view_surf.R . view_xifti.R . view_xifti_surface.R . view_xifti_volume.R . wb_cmd.R . write_cifti.R . write_cifti_from_separate.R . write_gifti.R . write_nifti.R . write_xifti2.R . Full ciftiTools package functions and examples
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