Other packages > Find by keyword >

ciftiTools  

Tools for Reading, Writing, Viewing and Manipulating CIFTI Files
View on CRAN: Click here


Download and install ciftiTools package within the R console
Install from CRAN:
install.packages("ciftiTools")

Install from Github:
library("remotes")
install_github("cran/ciftiTools")

Install by package version:
library("remotes")
install_version("ciftiTools", "0.18.0")



Attach the package and use:
library("ciftiTools")
Maintained by
Amanda Mejia
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-20
Latest Update: 2025-01-23
Description:
CIFTI files contain brain imaging data in "grayordinates," which represent the gray matter as cortical surface vertices (left and right) and subcortical voxels (cerebellum, basal ganglia, and other deep gray matter). 'ciftiTools' provides a unified environment for reading, writing, visualizing and manipulating CIFTI-format data. It supports the "dscalar," "dlabel," and "dtseries" intents. Grayordinate data is read in as a "xifti" object, which is structured for convenient access to the data and metadata, and includes support for surface geometry files to enable spatially-dependent functionality such as static or interactive visualizations and smoothing.
How to cite:
Amanda Mejia (2020). ciftiTools: Tools for Reading, Writing, Viewing and Manipulating CIFTI Files. R package version 0.18.0, https://cran.r-project.org/web/packages/ciftiTools. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.1.6.0 (2020-11-20 11:20), 0.2.2 (2021-03-16 06:50), 0.3.1 (2021-06-17 06:10), 0.4.3 (2021-08-19 15:40), 0.6.1 (2021-09-16 09:30), 0.7.0 (2021-11-17 16:00), 0.8.0 (2022-01-31 08:40), 0.9.0 (2022-05-16 08:10), 0.10.2 (2022-07-01 10:50), 0.11.0 (2023-01-23 14:40), 0.12.2 (2023-08-15 11:10), 0.13.4 (2024-01-21 14:03), 0.14.0 (2024-02-24 16:00), 0.15.1 (2024-06-25 10:00), 0.16.1 (2024-09-20 17:10), 0.17.4 (2025-01-23 23:20), 0.18.0 (2025-12-20 08:40)
Other packages that cited ciftiTools R package
View ciftiTools citation profile
Other R packages that ciftiTools depends, imports, suggests or enhances
Complete documentation for ciftiTools
Functions, R codes and Examples using the ciftiTools R package
Some associated functions: ROI_brainstructures_Param_LR . ROY_BIG_BL . S3_Math . S3_Ops . S3_Summary . add_surf . all_integers . apply_parc . apply_xifti . area_original_Param . area_target_Param . as.matrix.xifti . as.metric_gifti . as.surf_gifti . as.xifti . assure_parc . boundary_mask_surf . brainstructures_Param_LR . brainstructures_Param_all . check_cifti_type . ciftiTools.checkOption . ciftiTools.files . ciftiTools.getOption . ciftiTools.listOptions . ciftiTools . ciftiTools.setOption . ciftiTools_msg . ciftiTools_warn . cifti_component_suffix . cifti_fname_Param . combine_xifti . confirm_wb_cmd_path . convert_xifti . coordlist_to_vol . crop_image . crop_vol . dim.xifti . dist_from_mask_surf . dot-onAttach . edit_mask_surf . even_vert_samp . expand_color_pal . expect_equal_xifti . faces_Param . fix_gifti_mwall . fix_xifti . flatten_xifti . format_path . get_cifti_extn . get_data_meta_from_cifti_xml . get_intn_meta_from_cifti_xml . get_kwargs . get_misc_meta_from_cifti_xml . get_wb_cmd_path . header_cifti . idx_Param . infer_resolution . info_cifti . is.3D_mask . is.cifti . is.fname . is.nummat . is.subcort_labs . is.surf . is.xifti . is.xifti_data . is.xifti_meta . labels_Description . load_parc . load_sub_parc . load_surf . make_color_pal . make_cortex . make_subcort . make_trans_mat . make_xifti . mask_Param_vertices . mask_surf . mask_with_boundary_surf . match_exactly . match_input . merge_kwargs . merge_xifti . move_from_mwall . move_to_mwall . ncol_xifti . newdata_xifti . nrow_xifti . original_fnames_Param_remapped . original_fnames_Param_resampled . pad_vol . parc_add_subcortex . parc_borders . parc_mean_mat . parc_vals_to_xifti . plot.surf . plot.xifti . radial_order_surf . read_cifti . read_cifti_convert . read_cifti_flat . read_cifti_separate . read_dir_Param_separated . read_surf . read_xifti2 . remap_cifti . remap_cifti_wrapper . remap_gifti . remove_xifti . resamp_method_Param . resamp_res_Param_optional . resamp_res_Param_required . resample_cifti . resample_cifti_components . resample_cifti_default_fname . resample_cifti_from_template . resample_cifti_wrapper . resample_gifti . resample_surf . rgl_interactive_plots_Description . rgl_static_plots_Description . rotate_surf . run_wb_cmd . scale_xifti . select_xifti . separate_cifti . separate_cifti_files . separate_cifti_wrapper . set_names_xifti . smooth_cifti . smooth_gifti . substructure_table . summary.surf . summary.xifti . supported_intents . surfL_Param_optional . surfL_fname_Param . surfL_original_fname_Param . surfL_target_fname_Param . surfR_Param_optional . surfR_fname_Param . surfR_original_fname_Param . surfR_target_fname_Param . surf_area . surface_plot_Params . sys_path . template_xifti . transform_xifti . unmask_cortex . unmask_subcortex . unvec_vol . use_color_pal . verbose_Param_FALSE . verbose_Param_TRUE . vert_adjacency . vertices_Param . view_comp . view_surf . view_xifti.cbar . view_xifti.cleg . view_xifti . view_xifti.title . view_xifti_surface.color . view_xifti_surface.draw_mesh . view_xifti_surface.draw_title . view_xifti_surface.mesh_val . view_xifti_surface . view_xifti_surface.surf_hemi . view_xifti_volume . vox_locations . wb_path_request . welcome_msg . write_cifti . write_cifti_from_separate . write_dir_Param_generic . write_label_table . write_metric_gifti . write_spheres . write_subcort_nifti . write_surf_gifti . write_xifti2 . x_Param_xifti . xifti_Param . xml_cifti . 
Some associated R codes: add_surf.R . apply_xifti.R . as.gifti.R . as.xifti.R . ciftiTools-package.R . ciftiTools.files.R . combine_xifti.R . convert_xifti.R . edit_mask_surf.R . even_vert_samp.R . expect_equal_xifti.R . fix_gifti_mwalls.R . fix_xifti.R . flatten_xifti.R . info_cifti.R . is.xifti.R . load_parc.R . load_surf.R . make_xifti.R . make_xifti_components.R . merge_xifti.R . move_mwall.R . newdata_xifti.R . onAttach.R . options.R . parc_utils.R . read_cifti.R . read_cifti_convert.R . read_cifti_flat.R . read_cifti_separate.R . read_surf.R . read_xifti2.R . remap_cifti.R . remap_gifti.R . remove_xifti.R . resample_cifti.R . resample_cifti_components.R . resample_cifti_from_template.R . resample_gifti.R . resample_surf.R . rotate_surf.R . rox_args_docs.R . scale_xifti.R . select_xifti.R . separate_cifti.R . set_names_xifti.R . smooth_cifti.R . smooth_gifti.R . surf_area.R . template_xifti.R . transform_xifti.R . utils.R . utils_color.R . utils_surf.R . utils_volume.R . utils_xifti.R . view_comp.R . view_surf.R . view_xifti.R . view_xifti_surface.R . view_xifti_volume.R . wb_cmd.R . write_cifti.R . write_cifti_from_separate.R . write_gifti.R . write_nifti.R . write_xifti2.R .  Full ciftiTools package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA