Other packages > Find by keyword >

campsismod  

Generic Implementation of a PK/PD Model
View on CRAN: Click here


Download and install campsismod package within the R console
Install from CRAN:
install.packages("campsismod")

Install from Github:
library("remotes")
install_github("cran/campsismod")

Install by package version:
library("remotes")
install_version("campsismod", "1.2.0")



Attach the package and use:
library("campsismod")
Maintained by
Nicolas Luyckx
[Scholar Profile | Author Map]
First Published: 2022-02-14
Latest Update: 2024-02-16
Description:
A generic, easy-to-use and expandable implementation of a pharmacokinetic (PK) / pharmacodynamic (PD) model based on the S4 class system. This package allows the user to read/write a pharmacometric model from/to files and adapt it further on the fly in the R environment. For this purpose, this package provides an intuitive API to add, modify or delete equations, ordinary differential equations (ODE's), model parameters or compartment properties (like infusion duration or rate, bioavailability and initial values). Finally, this package also provides a useful export of the model for use with simulation packages 'rxode2' and 'mrgsolve'. This package is designed and intended to be used with package 'campsis', a PK/PD simulation platform built on top of 'rxode2' and 'mrgsolve'.
How to cite:
Nicolas Luyckx (2022). campsismod: Generic Implementation of a PK/PD Model. R package version 1.2.0, https://cran.r-project.org/web/packages/campsismod. Accessed 05 Apr. 2025.
Previous versions and publish date:
0.8.0 (2022-02-14 20:40), 0.8.1 (2022-05-24 10:50), 0.9.0 (2022-06-17 14:50), 1.0.0 (2023-04-11 14:10), 1.1.0 (2023-10-12 12:30), 1.1.1 (2024-02-16 11:50), 1.1.2 (2024-11-26 10:00), 1.2.0 (2025-02-07 15:40), 1.2.1 (2025-03-17 11:40)
Other packages that cited campsismod R package
View campsismod citation profile
Other R packages that campsismod depends, imports, suggests or enhances
Complete documentation for campsismod
Functions, R codes and Examples using the campsismod R package
Some associated functions: Bioavailability . CampsisModel . CodeRecords . Comment . Compartment . Compartments . Equation . ErrorRecord . IfStatement . InfusionDuration . InfusionRate . InitialCondition . LagTime . LineBreak . MainRecord . ModelStatements . Ode . OdeRecord . Omega . Parameters . Pattern . Position . Sigma . Theta . UnknownStatement . UnsupportedDestException . VariablePattern . add . addODECompartment . addProperties . addSuffix . allNa . appendCodeRecords . appendComment . appendCompartments . appendModel . appendParameters . as.data.frame . assertSingleCharacterString . autoDetectNONMEM . campsis_model-class . code_record-class . comment-class . compartment-class . compartment_bioavailability-class . compartment_infusion_duration-class . compartment_infusion_rate-class . compartment_initial_condition-class . compartment_lag_time-class . compartment_properties-class . compartment_property-class . compartments-class . contains . convertAnyComment . convertOutvarsToCapture . default . delete . disable . double_array_parameter-class . duration_record-class . equation-class . error_record-class . export . export_type-class . extractLhs . extractRhs . extractTextBetweenBrackets . f_record-class . find . fixOmega . getByIndex . getByName . getCompartmentIndex . getCompartments . getNONMEMName . getName . getNameInModel . getNames . getPrefix . getRecordDelimiter . getRecordEquationNames . getRecordName . getUncertainty . getVarCov . grapes-greater-than-grapes . hasComment . ifStatementPatternStr . if_statement-class . indexOf . init_record-class . isComment . isDiag . isEmptyLine . isEquation . isIfStatement . isODE . isRecordDelimiter . isStrictRecordDelimiter . lag_record-class . length . line_break-class . main_record-class . matchDoubleArrayParameter . matchSingleArrayParameter . maxIndex . methodsGlobalFunctions . minIndex . model_statement-class . model_statements-class . model_suite . mrgsolveBlock . mrgsolveCapture . mrgsolveCompartment . mrgsolveMain . mrgsolveMatrix . mrgsolveOde . mrgsolveParam . mrgsolveTable . mrgsolve_type-class . ode-class . ode_record-class . omega-class . parameter-class . parameters-class . parseIfStatement . parseStatements . pattern-class . pmx_element-class . pmx_list-class . pmx_position-class . pmx_position_by_element-class . pmx_position_by_index-class . processDoubleArrayArguments . processExtraArg . properties_record-class . rate_record-class . read.allparameters . read.campsis . read.model . read . read.parameters . read.pmxmod . read.varcov . removeNaColumn . removeTrailingLineBreaks . replace . replaceAll . rxodeCode . rxodeMatrix . rxodeParams . rxode_type-class . select . sigma-class . single_array_parameter-class . sort . standardise . statements_record-class . theta-class . toString . trim . unknown_statement-class . updateCompartments . variablePatternNoStartStr . variablePatternStr . variable_pattern-class . write . writeParameters . writeRecordDelimiter . writeVarcov . 
Some associated R codes: campsis_model.R . check.R . code_record.R . code_records.R . compartment.R . compartment_bioavailability.R . compartment_infusion_duration.R . compartment_infusion_rate.R . compartment_initial_condition.R . compartment_lag_time.R . compartment_properties.R . compartment_property.R . compartments.R . data.R . generic.R . generic_element_list.R . generic_element_position.R . generic_list.R . global.R . model_add_suffix.R . model_comment.R . model_equation.R . model_if_statement.R . model_line_break.R . model_ode.R . model_parser.R . model_statement.R . model_statements.R . model_unknown_statement.R . mrgsolve_conversion.R . mrgsolve_model.R . parameter.R . parameters.R . pattern.R . rxode_conversion.R . rxode_model.R . special_operators.R . utilities.R .  Full campsismod package functions and examples
Downloads during the last 30 days
03/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/0304/04Downloads for campsismod010203040506070TrendBars

Today's Hot Picks in Authors and Packages

leapp  
Latent Effect Adjustment After Primary Projection
These functions take a gene expression value matrix, a primary covariate vector, an additional know ...
Download / Learn more Package Citations See dependency  
TrendInTrend  
Odds Ratio Estimation and Power Calculation for the Trend in Trend Model
Estimation of causal odds ratio and power calculation given trends in exposure prevalenceand outcome ...
Download / Learn more Package Citations See dependency  
deepdive  
Deep Learning for General Purpose
Aims to provide simple intuitive functions to create quick prototypes of artificial neural network o ...
Download / Learn more Package Citations See dependency  
IGST  
Informative Gene Selection Tool
Mining informative genes with certain biological meanings are important for clinical diagnosis of di ...
Download / Learn more Package Citations See dependency  
gllvm  
Generalized Linear Latent Variable Models
Analysis of multivariate data using generalized linear latent variable models (gllvm). Estimation i ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

23,990

R Packages

207,311

Dependencies

64,809

Author Associations

23,991

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA