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campsismod  

Generic Implementation of a PK/PD Model
View on CRAN: Click here


Download and install campsismod package within the R console
Install from CRAN:
install.packages("campsismod")

Install from Github:
library("remotes")
install_github("cran/campsismod")

Install by package version:
library("remotes")
install_version("campsismod", "1.1.2")



Attach the package and use:
library("campsismod")
Maintained by
Nicolas Luyckx
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-02-14
Latest Update: 2024-02-16
Description:
A generic, easy-to-use and expandable implementation of a pharmacokinetic (PK) / pharmacodynamic (PD) model based on the S4 class system. This package allows the user to read/write a pharmacometric model from/to files and adapt it further on the fly in the R environment. For this purpose, this package provides an intuitive API to add, modify or delete equations, ordinary differential equations (ODE's), model parameters or compartment properties (like infusion duration or rate, bioavailability and initial values). Finally, this package also provides a useful export of the model for use with simulation packages 'rxode2' and 'mrgsolve'. This package is designed and intended to be used with package 'campsis', a PK/PD simulation platform built on top of 'rxode2' and 'mrgsolve'.
How to cite:
Nicolas Luyckx (2022). campsismod: Generic Implementation of a PK/PD Model. R package version 1.1.2, https://cran.r-project.org/web/packages/campsismod. Accessed 27 Jan. 2025.
Previous versions and publish date:
0.8.0 (2022-02-14 20:40), 0.8.1 (2022-05-24 10:50), 0.9.0 (2022-06-17 14:50), 1.0.0 (2023-04-11 14:10), 1.1.0 (2023-10-12 12:30), 1.1.1 (2024-02-16 11:50)
Other packages that cited campsismod R package
View campsismod citation profile
Other R packages that campsismod depends, imports, suggests or enhances
Complete documentation for campsismod
Functions, R codes and Examples using the campsismod R package
Some associated functions: Bioavailability . CampsisModel . CodeRecords . Comment . Compartment . Compartments . Equation . ErrorRecord . IfStatement . InfusionDuration . InfusionRate . InitialCondition . LagTime . LineBreak . MainRecord . ModelStatements . Ode . OdeRecord . Omega . Parameters . Pattern . Position . Sigma . Theta . UnknownStatement . UnsupportedDestException . VariablePattern . add . addODECompartment . addProperties . addSuffix . allNa . appendCodeRecords . appendComment . appendCompartments . appendModel . appendParameters . as.data.frame . assertSingleCharacterString . autoDetectNONMEM . campsis_model-class . code_record-class . comment-class . compartment-class . compartment_bioavailability-class . compartment_infusion_duration-class . compartment_infusion_rate-class . compartment_initial_condition-class . compartment_lag_time-class . compartment_properties-class . compartment_property-class . compartments-class . contains . convertAnyComment . convertOutvarsToCapture . default . delete . disable . double_array_parameter-class . duration_record-class . equation-class . error_record-class . export . export_type-class . extractLhs . extractRhs . extractTextBetweenBrackets . f_record-class . find . fixOmega . getByIndex . getByName . getCompartmentIndex . getCompartments . getNONMEMName . getName . getNameInModel . getNames . getPrefix . getRecordDelimiter . getRecordEquationNames . getRecordName . getUncertainty . getVarCov . grapes-greater-than-grapes . hasComment . ifStatementPatternStr . if_statement-class . indexOf . init_record-class . isComment . isDiag . isEmptyLine . isEquation . isIfStatement . isODE . isRecordDelimiter . isStrictRecordDelimiter . lag_record-class . length . line_break-class . main_record-class . matchDoubleArrayParameter . matchSingleArrayParameter . maxIndex . methodsGlobalFunctions . minIndex . model_statement-class . model_statements-class . model_suite . mrgsolveBlock . mrgsolveCapture . mrgsolveCompartment . mrgsolveMain . mrgsolveMatrix . mrgsolveOde . mrgsolveParam . mrgsolveTable . mrgsolve_type-class . ode-class . ode_record-class . omega-class . parameter-class . parameters-class . parseIfStatement . parseStatements . pattern-class . pmx_element-class . pmx_list-class . pmx_position-class . pmx_position_by_element-class . pmx_position_by_index-class . processDoubleArrayArguments . processExtraArg . properties_record-class . rate_record-class . read.allparameters . read.campsis . read.model . read . read.parameters . read.pmxmod . read.varcov . removeNaColumn . removeTrailingLineBreaks . replace . replaceAll . rxodeCode . rxodeMatrix . rxodeParams . rxode_type-class . select . sigma-class . single_array_parameter-class . sort . standardise . statements_record-class . theta-class . toString . trim . unknown_statement-class . updateCompartments . variablePatternNoStartStr . variablePatternStr . variable_pattern-class . write . writeParameters . writeRecordDelimiter . writeVarcov . 
Some associated R codes: campsis_model.R . check.R . code_record.R . code_records.R . compartment.R . compartment_bioavailability.R . compartment_infusion_duration.R . compartment_infusion_rate.R . compartment_initial_condition.R . compartment_lag_time.R . compartment_properties.R . compartment_property.R . compartments.R . data.R . generic.R . generic_element_list.R . generic_element_position.R . generic_list.R . global.R . model_add_suffix.R . model_comment.R . model_equation.R . model_if_statement.R . model_line_break.R . model_ode.R . model_parser.R . model_statement.R . model_statements.R . model_unknown_statement.R . mrgsolve_conversion.R . mrgsolve_model.R . parameter.R . parameters.R . pattern.R . rxode_conversion.R . rxode_model.R . special_operators.R . utilities.R .  Full campsismod package functions and examples
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