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bridger2
View on CRAN: Click
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Download and install bridger2 package within the R console
Install from CRAN:
install.packages("bridger2")
Install from Github:
library("remotes")
install_github("cran/bridger2")
Install by package version:
library("remotes")
install_version("bridger2", "0.1.0")
Attach the package and use:
library("bridger2")
Maintained by
Naoto Imamachi
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-12-05
Latest Update: 2016-12-05
Description:
BRIC-seq is a genome-wide approach for determining RNA stability in mammalian cells.
This package provides a series of functions for performing quality check of your BRIC-seq data,
calculation of RNA half-life for each transcript and comparison of RNA half-lives between two conditions.
How to cite:
Naoto Imamachi (2016). bridger2: Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data. R package version 0.1.0, https://cran.r-project.org/web/packages/bridger2. Accessed 22 Dec. 2024.
Previous versions and publish date:
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Complete documentation for bridger2
Functions, R codes and Examples using
the bridger2 R package
Some associated functions: BridgeRCore . BridgeRDataSetFromMatrix . BridgeRDataSetFromRaw . BridgeRDatasetChecker . BridgeRGrubbsTest . BridgeRHalfLifeCalc3models . BridgeRHalfLifeCalcR2Select . BridgeRNormalization . BridgeRNormalizationFactors . BridgeRNormalizationFactorsHK . BridgeRPvalueEvaluation . BridgeRResultChecker . BridgeReport . CalcHalflifeDeviation . RNA_halflife_comparison . RNA_halflife_comparison_HK . RNA_halflife_grubbs_test . halflife_table .
Some associated R codes: calc-Normalization.R . calc-RNA_halflife_3models.R . calc-RNA_halflife_R2_selection.R . calc-Relative_RPKM.R . calc-halflife_SD.R . calc-pvalue_evaluation.R . core.R . data.R . plots-RNA_halflife_comparison.R . plots-dataset_checking.R . reporting.R . util.R . Full bridger2 package functions and examples
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