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biomod2  

Ensemble Platform for Species Distribution Modeling
View on CRAN: Click here


Download and install biomod2 package within the R console
Install from CRAN:
install.packages("biomod2")

Install from Github:
library("remotes")
install_github("cran/biomod2")

Install by package version:
library("remotes")
install_version("biomod2", "4.2-5-2")



Attach the package and use:
library("biomod2")
Maintained by
Maya Gueguen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-11-09
Latest Update: 2023-06-16
Description:
Functions for species distribution modeling, calibration and evaluation, ensemble of models, ensemble forecasting and visualization. The package permits to run consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences) dataset and to combine them in ensemble models and ensemble projections. Some bench of other evaluation and visualisation tools are also available within the package.
How to cite:
Maya Gueguen (2012). biomod2: Ensemble Platform for Species Distribution Modeling. R package version 4.2-5-2, https://cran.r-project.org/web/packages/biomod2. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.3.1 (2012-11-09 09:50), 1.3.5 (2012-11-14 15:36), 2.0.0 (2013-02-02 19:25), 2.1.7 (2013-02-25 11:44), 2.1.15 (2013-03-14 13:16), 3.1-18 (2013-10-25 10:14), 3.1-24 (2013-11-25 11:54), 3.1-25 (2013-12-02 17:43), 3.1-48 (2014-07-07 18:13), 3.1-64 (2014-12-10 16:26), 3.3-7.1 (2019-03-08 10:25), 3.3-7 (2016-03-01 18:41), 3.4.6 (2020-02-26 19:20), 3.5.1 (2021-06-11 18:10), 4.1-2 (2022-10-25 14:35), 4.2-2 (2023-01-16 20:20), 4.2-3 (2023-05-11 12:30), 4.2-4 (2023-06-16 14:40), 4.2-5 (2024-05-02 15:53)
Other packages that cited biomod2 R package
View biomod2 citation profile
Other R packages that biomod2 depends, imports, suggests or enhances
Complete documentation for biomod2
Functions, R codes and Examples using the biomod2 R package
Some associated functions: BIOMOD.ensemble.models.out . BIOMOD.formated.data.PA . BIOMOD.formated.data . BIOMOD.models.options . BIOMOD.models.out . BIOMOD.projection.out . BIOMOD.stored.data . BIOMOD_ConvertOldRun-deprecated . BIOMOD_CrossValidation-deprecated . BIOMOD_CrossValidation . BIOMOD_EnsembleForecasting . BIOMOD_EnsembleModeling . BIOMOD_FormatingData . BIOMOD_LoadModels . BIOMOD_Modeling . BIOMOD_ModelingOptions . BIOMOD_PresenceOnly . BIOMOD_Projection . BIOMOD_RangeSize . BIOMOD_Tuning . BIOMOD_cv-deprecated . BIOMOD_presenceonly-deprecated . BIOMOD_tuning-deprecated . BinaryTransformation-deprecated . CustomIndexMaker-deprecated . DataSpecies . FilteringTransformation-deprecated . Find.Optim.Stat-deprecated . Print_Default_ModelingOptions-deprecated . ProbDensFunc-deprecated . bioclim_current . bioclim_future . biomod2-deprecated . biomod2_ensemble_model . biomod2_model . bm_BinaryTransformation . bm_CVnnet . bm_CrossValidation . bm_FindOptimStat . bm_MakeFormula . bm_PlotEvalBoxplot . bm_PlotEvalMean . bm_PlotRangeSize . bm_PlotResponseCurves . bm_PlotVarImpBoxplot . bm_PseudoAbsences . bm_RunModelsLoop . bm_SRE . bm_SampleBinaryVector . bm_SampleFactorLevels . bm_VariablesImportance . calculate.stat-deprecated . check_duplicated_cells . dot-categorical2numeric . dot-check_bytes_format . dot-get_categorical_names . dot-get_env_class . dot-load_gam_namespace . dot-transform.outputs.array-deprecated . dot-transform.outputs.list-deprecated . dot-transform_model.as.col . getStatOptimValue-deprecated . getters.bm . getters.out . load_stored_object . makeFormula-deprecated . models_scores_graph-deprecated . plot . predict.bm . predict.em . predict2.bm . predict2.em . rast.has.values . response.plot-deprecated . response.plot2-deprecated . sample.factor.levels-deprecated . sre-deprecated . summary . update_objects-deprecated . variables_importance-deprecated . zzz_bm . 
Some associated R codes: BIOMOD_CrossValidation.R . BIOMOD_EnsembleForecasting.R . BIOMOD_EnsembleModeling.R . BIOMOD_FormatingData.R . BIOMOD_LoadModels.R . BIOMOD_Modeling.R . BIOMOD_ModelingOptions.R . BIOMOD_PresenceOnly.R . BIOMOD_Projection.R . BIOMOD_RangeSize.R . BIOMOD_Tuning.R . DEPRECATED.R . biomod2-package.R . biomod2_classes_1.R . biomod2_classes_2.R . biomod2_classes_3.R . biomod2_classes_4.R . biomod2_classes_5.R . biomod2_data.R . biomod2_globalVariables.R . biomod2_internal.R . bm_BinaryTransformation.R . bm_CVnnet.R . bm_CrossValidation.R . bm_FindOptimStat.R . bm_MakeFormula.R . bm_PlotEvalBoxplot.R . bm_PlotEvalMean.R . bm_PlotRangeSize.R . bm_PlotResponseCurves.R . bm_PlotVarImpBoxplot.R . bm_PseudoAbsences.R . bm_RunModelsLoop.R . bm_SRE.R . bm_SampleBinaryVector.R . bm_SampleFactorLevels.R . bm_VariablesImportance.R . zzz.R .  Full biomod2 package functions and examples
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