R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
biomartr
View on CRAN: Click
here
Download and install biomartr package within the R console
Install from CRAN:
install.packages("biomartr")
Install from Github:
library("remotes")
install_github("cran/biomartr") Install by package version:
library("remotes")
install_version("biomartr", "1.0.7") Attach the package and use:
library("biomartr")
Maintained by
Hajk-Georg Drost
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-07-22
Latest Update: 2023-12-02
Description:
Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized
way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome
retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL',
and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database
(Smedley et al. (2009) ) allows users to retrieve
functional annotation for genomic loci. In addition, users can download entire databases such
as 'NCBI RefSeq' (Pruitt et al. (2007) ), 'NCBI nr',
'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) ), etc. with only one command.
How to cite:
Hajk-Georg Drost (2015). biomartr: Genomic Data Retrieval. R package version 1.0.7, https://cran.r-project.org/web/packages/biomartr. Accessed 20 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:22), 0.0.1 (2015-07-22 16:15), 0.0.2 (2015-08-07 20:44), 0.0.3 (2016-03-02 17:18), 0.1.0 (2016-08-07 18:25), 0.2.0 (2016-11-22 09:07), 0.2.1 (2016-12-15 17:57), 0.3.0 (2017-02-09 19:59), 0.4.0 (2017-03-14 06:58), 0.5.1 (2017-05-28 21:08), 0.5.2 (2017-09-20 19:35), 0.7.0 (2018-01-03 02:06), 0.8.0 (2018-06-27 19:14), 0.9.0 (2019-05-21 19:40), 0.9.1 (2019-12-10 18:50), 0.9.2 (2020-01-11 00:00), 1.0.2 (2022-02-23 14:50), 1.0.3 (2023-05-07 23:40), 1.0.4 (2023-06-20 15:50), 1.0.5 (2023-10-04 17:50), 1.0.6 (2023-10-24 22:40)
Other packages that cited biomartr R package
View biomartr citation profile
Other R packages that biomartr depends,
imports, suggests or enhances
Complete documentation for biomartr
Functions, R codes and Examples using
the biomartr R package
Some associated functions: biomart . biomartr-package . cachedir . cachedir_set . check_annotation_biomartr . clean.retrieval . download.database.all . download.database . ensembl_divisions . get.ensembl.info . getAssemblyStats . getAttributes . getBio . getBioSet . getCDS . getCDSSet . getCollection . getCollectionSet . getDatasets . getENSEMBL.Seq . getENSEMBL.gtf . getENSEMBL . getENSEMBLGENOMESInfo . getENSEMBLInfo . getFilters . getGENOMEREPORT . getGFF . getGFFSet . getGO . getGTF . getGenome . getGenomeSet . getGroups . getKingdomAssemblySummary . getKingdoms . getMarts . getMetaGenomeAnnotations . getMetaGenomeSummary . getMetaGenomes . getProteome . getProteomeSet . getRNA . getRNASet . getReleases . getRepeatMasker . getSummaryFile . getUniProtInfo . getUniProtSTATS . is.genome.available . listDatabases . listGenomes . listGroups . listKingdoms . listMetaGenomes . meta.retrieval.all . meta.retrieval . organismAttributes . organismBM . organismFilters . read_assemblystats . read_cds . read_genome . read_gff . read_proteome . read_rm . read_rna . refseqOrganisms . summary_cds . summary_genome .
Some associated R codes: N50.R . Refseq_Genbank_ftp_generics.R . Refseq_Genbank_post_processing.R . biomart.R . biomartr-package.R . check_annotation_biomartr.R . clean.retrieval.R . clean_species_names_helper.R . connected.to.internet.R . custom_download.R . download_database.R . download_database_all.R . ensembl_ftp_generics.R . existingOrganisms.R . existingOrganisms_ensembl.R . exists.ftp.file.R . get.ensembl.info.R . get.ensemblgenome.info.R . getAssemblyStats.R . getAttributes.R . getBioSet.R . getCDS.R . getCDSSet.R . getCollection.R . getCollectionSet.R . getDatasets.R . getENSEMBL.Annotation.R . getENSEMBL.R . getENSEMBL.Seq.R . getENSEMBL.gtf.R . getENSEMBLGENOMES.Annotation.R . getENSEMBLGENOMES.R . getENSEMBLGENOMES.Seq.R . getENSEMBLGENOMES.gtf.R . getENSEMBLGENOMESInfo.R . getENSEMBLInfo.R . getFilters.R . getGENOMEREPORT.R . getGFF.R . getGFFSet.R . getGO.R . getGTF.R . getGenome.R . getGenomeSet.R . getGroups.R . getKingdomAssemblySummary.R . getKingdoms.R . getMarts.R . getMetaGenomeAnnotations.R . getMetaGenomeSummary.R . getMetaGenomes.R . getProteome.R . getProteomeSet.R . getRNA.R . getRNASet.R . getReleases.R . getRepeatMasker.R . getSet.R . getSubMarts.R . getSummaryFile.R . getUniProtInfo.R . getUniProtSTATS.R . getUniProtSeq.R . is.ensembl.alive.R . is.ensemblgenomes.alive.R . is.genome.available.R . is.taxid.R . listDatabases.R . listGenomes.R . listGroups.R . listKingdoms.R . listMetaGenomes.R . listNCBIDatabases.R . messages.R . meta.retrieval.R . meta.retrieval.all.R . organismAttributes.R . organismBM.R . organismFilters.R . readAssemblyDoc.R . read_assemblystats.R . read_cds.R . read_genome.R . read_gff.R . read_md5file.R . read_proteome.R . read_rm.R . read_rna.R . refseqOrganisms.R . summary_cds.R . summary_genome.R . test_url_status.R . tidy_name.R . tidy_name2.R . toupper_first_char.R . utils.R . Full biomartr package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
AsthmaNHANES
Data sets and examples from National Health and Nutritional Examination Survey (NHANES). ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Tao Sun (view profile)
Brundle
Inter-sample condition variability is a key challenge of normalising ChIP-seq data. This implementat ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Andrew N Holding (view profile)
ggtea
A collection of palettes and themes for 'ggplot2', offering a light, pastel aesthetic. Syntax follow ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pushkar Sarkar (view profile)
mapaccuracy
Unbiased estimators of overall and per-class thematic map accuracy and area published in Olofsson et ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Hugo Costa (view profile)
matlabr
Provides users to call MATLAB from using the "system" command.
Allows users to submit lines of code ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: John Muschelli (view profile)
rfishbase
A programmatic interface to 'FishBase', re-written
based on an accompanying 'RESTful' API. Access t ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Carl Boettiger (view profile)
28,313
R Packages
239,283
Dependencies
75,034
Author Associations
28,314
Publication Badges
